PDB entry 6zyq
View 6zyq on RCSB PDB site
Description: Structure of NDM-1 with 2-Mercaptomethyl-thiazolidine D-syn-1b
Class: antimicrobial protein
Keywords: antibiotic resistance, lactamase, zinc, inhibitor, ANTIMICROBIAL PROTEIN
Deposited on
2020-08-02, released
2021-01-20
The last revision prior to the SCOPe 2.08 freeze date was dated
2021-07-07, with a file datestamp of
2021-07-02.
Experiment type: XRAY
Resolution: 1.7 Å
R-factor: N/A
AEROSPACI score: 0.49
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Metallo-beta-lactamase type 2
Species: Klebsiella pneumoniae [TaxId:573]
Gene: blaNDM-1
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6zyqa_ - Chain 'B':
Compound: Metallo-beta-lactamase type 2
Species: Klebsiella pneumoniae [TaxId:573]
Gene: blaNDM-1
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6zyqb_ - Heterogens: QST, ZN, SO4, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>6zyqA (A:)
gsgeirptigqqmetgdqrfgdlvfrqlapnvwqhtsyldmpgfgavasnglivrdggrv
lvvdtawtddqtaqilnwikqeinlpvalavvthahqdkmggmdalhaagiatyanalsn
qlapqegmvaaqhsltfaangwvepatapnfgplkvfypgpghtsdnitvgidgtdiafg
gclikdskakslgnlgdadtehyaasarafgaafpkasmivmshsapdsraaithtarma
dklr
Sequence, based on observed residues (ATOM records): (download)
>6zyqA (A:)
irptigqqmetgdqrfgdlvfrqlapnvwqhtsyldmpgfgavasnglivrdggrvlvvd
tawtddqtaqilnwikqeinlpvalavvthahqdkmggmdalhaagiatyanalsnqlap
qegmvaaqhsltfaangwvepatapnfgplkvfypgpghtsdnitvgidgtdiafggcli
kdskakslgnlgdadtehyaasarafgaafpkasmivmshsapdsraaithtarmadklr
- Chain 'B':
Sequence, based on SEQRES records: (download)
>6zyqB (B:)
gsgeirptigqqmetgdqrfgdlvfrqlapnvwqhtsyldmpgfgavasnglivrdggrv
lvvdtawtddqtaqilnwikqeinlpvalavvthahqdkmggmdalhaagiatyanalsn
qlapqegmvaaqhsltfaangwvepatapnfgplkvfypgpghtsdnitvgidgtdiafg
gclikdskakslgnlgdadtehyaasarafgaafpkasmivmshsapdsraaithtarma
dklr
Sequence, based on observed residues (ATOM records): (download)
>6zyqB (B:)
dqrfgdlvfrqlapnvwqhtsyldmpgfgavasnglivrdggrvlvvdtawtddqtaqil
nwikqeinlpvalavvthahqdkmggmdalhaagiatyanalsnqlapqegmvaaqhslt
faangwvepatapnfgplkvfypgpghtsdnitvgidgtdiafggclikdskakslgnlg
dadtehyaasarafgaafpkasmivmshsapdsraaithtarmadklr