PDB entry 6zvi

View 6zvi on RCSB PDB site
Description: Mbf1-ribosome complex
Class: ribosome
Keywords: translation, frameshifting, collision, RIBOSOME
Deposited on 2020-07-24, released 2020-09-09
The last revision prior to the SCOPe 2.07 freeze date was dated 2020-09-09, with a file datestamp of 2020-09-04.
Experiment type: EM
Resolution: 3 Å
R-factor: N/A
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

• Chain 'A':
  Compound: 40S ribosomal protein S18-A
  Species: Saccharomyces cerevisiae [TaxId:4932]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0CX55 (0-144)
• Chain 'B':
  Compound: 40S ribosomal protein S19-A
  Species: Saccharomyces cerevisiae [TaxId:4932]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P07280 (0-142)
• Chain 'C':
  Compound: RPS20 isoform 1
  Species: Saccharomyces cerevisiae [TaxId:4932]
  Database cross-references and differences (RAF-indexed):
  • Uniprot A0A6A5PVE9 (0-100)
• Chain 'D':
  Compound: 40S ribosomal protein S21-A
  Species: Saccharomyces cerevisiae [TaxId:4932]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0C0V8 (0-86)
• Chain 'E':
  Compound: RPS22A isoform 1
  Species: Saccharomyces cerevisiae [TaxId:4932]
  Database cross-references and differences (RAF-indexed):
  • Uniprot A0A6A5PSE9 (0-128)
• Chain 'H':
  Compound: 40S ribosomal protein S23-A
  Species: Saccharomyces cerevisiae [TaxId:4932]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0CX29 (0-143)
• Chain 'I':
  Compound: 40S ribosomal protein S24-A
  Species: Saccharomyces cerevisiae [TaxId:4932]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0CX31 (0-133)
• Chain 'J':
  Compound: RPS25A isoform 1
  Species: Saccharomyces cerevisiae [TaxId:4932]
  Database cross-references and differences (RAF-indexed):
  • Uniprot A0A6A5PZ18 (0-68)
• Chain 'K':
  Compound: RPS26B isoform 1
  Species: Saccharomyces cerevisiae [TaxId:4932]
  Database cross-references and differences (RAF-indexed):
  • Uniprot A0A6A5Q0E8 (0-96)
• Chain 'L':
  Compound: 40S ribosomal protein S27-A
  Species: Saccharomyces cerevisiae [TaxId:4932]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P35997 (0-80)
• Chain 'N':
  Compound: RPS28A isoform 1
  Species: Saccharomyces cerevisiae [TaxId:4932]
  Database cross-references and differences (RAF-indexed):
  • Uniprot A0A6A5Q700 (0-62)
• Chain 'O':
  Compound: RPS29A isoform 1
  Species: Saccharomyces cerevisiae [TaxId:4932]
  Database cross-references and differences (RAF-indexed):
  • Uniprot A0A6A5PV92 (0-52)
• Chain 'P':
  Compound: 40S ribosomal protein S30-A
  Species: Saccharomyces cerevisiae [TaxId:4932]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0CX33 (0-45)
• Chain 'Q':
  Compound: RPS31 isoform 1
  Species: Saccharomyces cerevisiae [TaxId:4932]
  Database cross-references and differences (RAF-indexed):
  • Uniprot A0A6A5PU37 (0-72)
    • conflict (17)
• Chain 'R':
  Compound: Guanine nucleotide-binding protein subunit beta-like protein
  Species: Saccharomyces cerevisiae [TaxId:4932]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P38011 (0-312)
    • conflict (154)
  Domains in SCOPe 2.07: d6zvir_
• Chain 'T':
  Compound: MBF1 isoform 1
  Species: Saccharomyces cerevisiae [TaxId:4932]
  Database cross-references and differences (RAF-indexed):
  • Uniprot A0A6A5Q7X0 (0-110)
• Chain 'd':
  Compound: A/P-site tRNA
  Species: Saccharomyces cerevisiae [TaxId:4932]
  
• Chain 'e':
  Compound: P/E-site tRNA
  Species: Saccharomyces cerevisiae [TaxId:4932]
  
• Chain 'f':
  Compound: mRNA
  Species: Saccharomyces cerevisiae [TaxId:4932]
  
• Chain 'h':
  Compound: 18S rRNA
  Species: Saccharomyces cerevisiae [TaxId:4932]
  
• Chain 'i':
  Compound: 40S ribosomal protein S0-A
  Species: Saccharomyces cerevisiae [TaxId:4932]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P32905 (0-205)
• Chain 'j':
  Compound: RPS1A isoform 1
  Species: Saccharomyces cerevisiae [TaxId:4932]
  Database cross-references and differences (RAF-indexed):
  • Uniprot A0A6A5PRY4 (0-215)
• Chain 'k':
  Compound: RPS2 isoform 1
  Species: Saccharomyces cerevisiae [TaxId:4932]
  Database cross-references and differences (RAF-indexed):
  • Uniprot A0A6A5PWF7 (0-216)
• Chain 'l':
  Compound: RPS3 isoform 1
  Species: Saccharomyces cerevisiae [TaxId:4932]
  Database cross-references and differences (RAF-indexed):
  • Uniprot A0A6A5Q3Q1 (0-222)
• Chain 'm':
  Compound: 40S ribosomal protein S4-A
  Species: Saccharomyces cerevisiae [TaxId:4932]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0CX35 (0-259)
• Chain 'n':
  Compound: Rps5p
  Species: Saccharomyces cerevisiae [TaxId:4932]
  Database cross-references and differences (RAF-indexed):
  • Uniprot A0A1L4AA68 (0-205)
• Chain 'o':
  Compound: 40S ribosomal protein S6-A
  Species: Saccharomyces cerevisiae [TaxId:4932]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0CX37 (0-217)
• Chain 'p':
  Compound: 40S ribosomal protein S7-A
  Species: Saccharomyces cerevisiae [TaxId:4932]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P26786 (0-184)
• Chain 'q':
  Compound: 40S ribosomal protein S8-A
  Species: Saccharomyces cerevisiae [TaxId:4932]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0CX39 (0-198)
• Chain 'r':
  Compound: 40S ribosomal protein S9-A
  Species: Saccharomyces cerevisiae [TaxId:4932]
  Database cross-references and differences (RAF-indexed):
  • Uniprot O13516 (0-184)
• Chain 's':
  Compound: 40S ribosomal protein S10-A
  Species: Saccharomyces cerevisiae [TaxId:4932]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q08745 (0-91)
• Chain 't':
  Compound: 40S ribosomal protein S11-A
  Species: Saccharomyces cerevisiae [TaxId:4932]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0CX47 (0-145)
• Chain 'u':
  Compound: RPS12 isoform 1
  Species: Saccharomyces cerevisiae [TaxId:4932]
  Database cross-references and differences (RAF-indexed):
  • Uniprot A0A6A5Q8I3 (0-123)
• Chain 'v':
  Compound: 40S ribosomal protein S13
  Species: Saccharomyces cerevisiae [TaxId:4932]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P05756 (0-149)
• Chain 'w':
  Compound: 40S ribosomal protein S14-B
  Species: Saccharomyces cerevisiae [TaxId:4932]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P39516 (0-127)
• Chain 'x':
  Compound: RPS15 isoform 1
  Species: Saccharomyces cerevisiae [TaxId:4932]
  Database cross-references and differences (RAF-indexed):
  • Uniprot A0A6A5Q6F2 (0-118)
• Chain 'y':
  Compound: 40S ribosomal protein S16-A
  Species: Saccharomyces cerevisiae [TaxId:4932]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P0CX51 (0-140)
• Chain 'z':
  Compound: 40S ribosomal protein S17-A
  Species: Saccharomyces cerevisiae [TaxId:4932]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P02407 (0-124)
• Heterogens: ZN

PDB Chain Sequences:

• Chain 'A':
  No sequence available.
  
  
• Chain 'B':
  No sequence available.
  
  
• Chain 'C':
  No sequence available.
  
  
• Chain 'D':
  No sequence available.
  
  
• Chain 'E':
  No sequence available.
  
  
• Chain 'H':
  No sequence available.
  
  
• Chain 'I':
  No sequence available.
  
  
• Chain 'J':
  No sequence available.
  
  
• Chain 'K':
  No sequence available.
  
  
• Chain 'L':
  No sequence available.
  
  
• Chain 'N':
  No sequence available.
  
  
• Chain 'O':
  No sequence available.
  
  
• Chain 'P':
  No sequence available.
  
  
• Chain 'Q':
  No sequence available.
  
  
• Chain 'R':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >6zviR (R:)
  lvlrgtleghngwvtslatsagqpnlllsasrdktliswkltgddqkfgvpvrsfkghsh
  ivqdctltadgayalsaswdktlrlwdvatgetyqrfvghksdvmsvdidkkasmiisgs
  rdktikvwtikgqclatllghndwvsqvrvvpneaadddsvtiisagndkmvkawnlnqf
  qieadfighnsnintltaspdgtliasagkdgeimlwnlaakkamytlsaqdevfslafs
  pnrywlaaatatgikvfsldpqylvddlrpefagyskaaephavslawsadgqtlfagyt
  dnvirvwqvmtan
  

  
  
• Chain 'T':
  No sequence available.
  
  
• Chain 'd':
  No sequence available.
  
  
• Chain 'e':
  No sequence available.
  
  
• Chain 'f':
  No sequence available.
  
  
• Chain 'h':
  No sequence available.
  
  
• Chain 'i':
  No sequence available.
  
  
• Chain 'j':
  No sequence available.
  
  
• Chain 'k':
  No sequence available.
  
  
• Chain 'l':
  No sequence available.
  
  
• Chain 'm':
  No sequence available.
  
  
• Chain 'n':
  No sequence available.
  
  
• Chain 'o':
  No sequence available.
  
  
• Chain 'p':
  No sequence available.
  
  
• Chain 'q':
  No sequence available.
  
  
• Chain 'r':
  No sequence available.
  
  
• Chain 's':
  No sequence available.
  
  
• Chain 't':
  No sequence available.
  
  
• Chain 'u':
  No sequence available.
  
  
• Chain 'v':
  No sequence available.
  
  
• Chain 'w':
  No sequence available.
  
  
• Chain 'x':
  No sequence available.
  
  
• Chain 'y':
  No sequence available.
  
  
• Chain 'z':
  No sequence available.