PDB entry 6zvh

View 6zvh on RCSB PDB site
Description: EDF1-ribosome complex
Class: ribosome
Keywords: translation, frameshifting, collision, RIBOSOME
Deposited on 2020-07-24, released 2020-08-19
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-08-19, with a file datestamp of 2020-08-14.
Experiment type: EM
Resolution: 2.9 Å
R-factor: N/A
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

• Chain '2':
  Compound: 18S rRNA
  Species: Homo sapiens [TaxId:9606]
  
• Chain 'A':
  Compound: 40S Ribosomal protein SA
  Species: Homo sapiens [TaxId:9606]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P08865 (0-220)
• Chain 'B':
  Compound: 40s ribosomal protein s3a
  Species: Homo sapiens [TaxId:9606]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P61247
• Chain 'C':
  Compound: 40S ribosomal protein S2
  Species: Homo sapiens [TaxId:9606]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P15880 (0-221)
• Chain 'D':
  Compound: 40S ribosomal protein S3
  Species: Homo sapiens [TaxId:9606]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P23396 (0-226)
• Chain 'E':
  Compound: 40S ribosomal protein S4, X isoform
  Species: Homo sapiens [TaxId:9606]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P62701 (0-261)
• Chain 'F':
  Compound: 40S ribosomal protein S5
  Species: Homo sapiens [TaxId:9606]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P46782 (0-188)
• Chain 'G':
  Compound: 40s ribosomal protein s6
  Species: Homo sapiens [TaxId:9606]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P62753 (0-236)
• Chain 'H':
  Compound: 40S ribosomal protein S7
  Species: Homo sapiens [TaxId:9606]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P62081 (0-188)
• Chain 'I':
  Compound: 40s ribosomal protein s8
  Species: Homo sapiens [TaxId:9606]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P62241 (0-205)
• Chain 'J':
  Compound: 40S ribosomal protein S9
  Species: Homo sapiens [TaxId:9606]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P46781 (0-184)
• Chain 'K':
  Compound: 40S ribosomal protein S10
  Species: Homo sapiens [TaxId:9606]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P46783 (0-97)
• Chain 'L':
  Compound: 40S ribosomal protein S11
  Species: Homo sapiens [TaxId:9606]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P62280 (0-152)
• Chain 'M':
  Compound: 40s ribosomal protein s12
  Species: Homo sapiens [TaxId:9606]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P25398 (0-121)
    • conflict (41)
    • conflict (58)
    • conflict (88)
• Chain 'N':
  Compound: 40S ribosomal protein S13
  Species: Homo sapiens [TaxId:9606]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P62277 (0-149)
• Chain 'O':
  Compound: 40s ribosomal protein s14
  Species: Homo sapiens [TaxId:9606]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P62263 (0-139)
• Chain 'P':
  Compound: 40S ribosomal protein S15
  Species: Homo sapiens [TaxId:9606]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P62841 (0-128)
• Chain 'Q':
  Compound: 40S ribosomal protein S16
  Species: Homo sapiens [TaxId:9606]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P62249 (0-143)
• Chain 'R':
  Compound: 40S ribosomal protein S17
  Species: Homo sapiens [TaxId:9606]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P08708 (0-134)
• Chain 'S':
  Compound: 40S ribosomal protein S18
  Species: Homo sapiens [TaxId:9606]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P62269 (0-144)
• Chain 'T':
  Compound: 40S ribosomal protein S19
  Species: Homo sapiens [TaxId:9606]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P39019 (0-142)
• Chain 'U':
  Compound: 40S ribosomal protein S20
  Species: Homo sapiens [TaxId:9606]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P60866 (0-103)
• Chain 'V':
  Compound: 40S ribosomal protein S21
  Species: Homo sapiens [TaxId:9606]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P63220 (0-82)
• Chain 'W':
  Compound: 40S ribosomal protein S15a
  Species: Homo sapiens [TaxId:9606]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P62244 (0-128)
• Chain 'X':
  Compound: 40S ribosomal protein S23
  Species: Homo sapiens [TaxId:9606]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P62266 (0-140)
• Chain 'Y':
  Compound: 40S ribosomal protein S24
  Species: Homo sapiens [TaxId:9606]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P62847 (0-130)
• Chain 'Z':
  Compound: 40S ribosomal protein S25
  Species: Homo sapiens [TaxId:9606]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P62851 (0-74)
• Chain 'a':
  Compound: 40S ribosomal protein S26
  Species: Homo sapiens [TaxId:9606]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P62854 (0-101)
• Chain 'b':
  Compound: 40S ribosomal protein S27
  Species: Homo sapiens [TaxId:9606]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P42677 (0-82)
• Chain 'c':
  Compound: 40S ribosomal protein S28
  Species: Homo sapiens [TaxId:9606]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P62857 (0-63)
• Chain 'd':
  Compound: 40S ribosomal protein S29
  Species: Homo sapiens [TaxId:9606]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P62273 (0-54)
• Chain 'e':
  Compound: 40S ribosomal protein S30
  Species: Homo sapiens [TaxId:9606]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P62861 (0-41)
• Chain 'f':
  Compound: Ubiquitin-40S ribosomal protein S27a
  Species: Homo sapiens [TaxId:9606]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P62979 (0-66)
• Chain 'g':
  Compound: Receptor of activated protein C kinase 1
  Species: Homo sapiens [TaxId:9606]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P63244 (0-312)
  Domains in SCOPe 2.08: d6zvhg_
• Chain 'i':
  Compound: Endothelial differentiation-related factor 1
  Species: Homo sapiens [TaxId:9606]
  Database cross-references and differences (RAF-indexed):
  • Uniprot O60869 (0-109)
• Chain 'x':
  Compound: E-site tRNA
  Species: Homo sapiens [TaxId:9606]
  
• Chain 'y':
  Compound: Cell growth-regulating nucleolar protein
  Species: Homo sapiens [TaxId:9606]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q9NX58 (0-71)
• Heterogens: MG, ZN

PDB Chain Sequences:

• Chain '2':
  No sequence available.
  
  
• Chain 'A':
  No sequence available.
  
  
• Chain 'B':
  No sequence available.
  
  
• Chain 'C':
  No sequence available.
  
  
• Chain 'D':
  No sequence available.
  
  
• Chain 'E':
  No sequence available.
  
  
• Chain 'F':
  No sequence available.
  
  
• Chain 'G':
  No sequence available.
  
  
• Chain 'H':
  No sequence available.
  
  
• Chain 'I':
  No sequence available.
  
  
• Chain 'J':
  No sequence available.
  
  
• Chain 'K':
  No sequence available.
  
  
• Chain 'L':
  No sequence available.
  
  
• Chain 'M':
  No sequence available.
  
  
• Chain 'N':
  No sequence available.
  
  
• Chain 'O':
  No sequence available.
  
  
• Chain 'P':
  No sequence available.
  
  
• Chain 'Q':
  No sequence available.
  
  
• Chain 'R':
  No sequence available.
  
  
• Chain 'S':
  No sequence available.
  
  
• Chain 'T':
  No sequence available.
  
  
• Chain 'U':
  No sequence available.
  
  
• Chain 'V':
  No sequence available.
  
  
• Chain 'W':
  No sequence available.
  
  
• Chain 'X':
  No sequence available.
  
  
• Chain 'Y':
  No sequence available.
  
  
• Chain 'Z':
  No sequence available.
  
  
• Chain 'a':
  No sequence available.
  
  
• Chain 'b':
  No sequence available.
  
  
• Chain 'c':
  No sequence available.
  
  
• Chain 'd':
  No sequence available.
  
  
• Chain 'e':
  No sequence available.
  
  
• Chain 'f':
  No sequence available.
  
  
• Chain 'g':
  Sequence; same for both SEQRES and ATOM records: (download)
  

  >6zvhg (g:)
  teqmtlrgtlkghngwvtqiattpqfpdmilsasrdktiimwkltrdetnygipqralrg
  hshfvsdvvissdgqfalsgswdgtlrlwdlttgtttrrfvghtkdvlsvafssdnrqiv
  sgsrdktiklwntlgvckytvqdeshsewvscvrfspnssnpiivscgwdklvkvwnlan
  cklktnhightgylntvtvspdgslcasggkdgqamlwdlnegkhlytldggdiinalcf
  spnrywlcaatgpsikiwdlegkiivdelkqevistsskaeppqctslawsadgqtlfag
  ytdnlvrvwqvti
  

  
  
• Chain 'i':
  No sequence available.
  
  
• Chain 'x':
  No sequence available.
  
  
• Chain 'y':
  No sequence available.