PDB entry 6zuo
View 6zuo on RCSB PDB site
Description: Human RIO1(kd)-StHA late pre-40S particle, structural state A (pre 18S rRNA cleavage)
Class: ribosome
Keywords: Human ribosome biogenesis, small ribosomal subunit, rRNA processing, RIBOSOME
Deposited on
2020-07-23, released
2021-05-12
The last revision prior to the SCOPe 2.08 freeze date was dated
2021-05-12, with a file datestamp of
2021-05-07.
Experiment type: EM
Resolution: 3.1 Å
R-factor: N/A
AEROSPACI score: 0.21
(click here for full SPACI score report)
Chains and heterogens:
- Chain '2':
Compound: pre-18S ribosomal RNA
Species: Homo sapiens [TaxId:9606]
- Chain 'A':
Compound: 40S Ribosomal protein SA
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'B':
Compound: 40s ribosomal protein s3a
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'C':
Compound: 40S ribosomal protein S2
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'D':
Compound: 40S ribosomal protein S3
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'E':
Compound: 40S ribosomal protein S4, X isoform
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'F':
Compound: 40S ribosomal protein S5
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'G':
Compound: 40s ribosomal protein s6
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'H':
Compound: 40S ribosomal protein S7
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'I':
Compound: 40s ribosomal protein s8
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'J':
Compound: 40S ribosomal protein S9
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'K':
Compound: 40S ribosomal protein S10
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'L':
Compound: 40S ribosomal protein S11
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'M':
Compound: 40s ribosomal protein s12
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'N':
Compound: 40S ribosomal protein S13
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'O':
Compound: 40s ribosomal protein s14
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'P':
Compound: 40S ribosomal protein S15
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'Q':
Compound: 40S ribosomal protein S16
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'R':
Compound: 40S ribosomal protein S17
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'S':
Compound: 40S ribosomal protein S18
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'T':
Compound: 40S ribosomal protein S19
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'U':
Compound: 40S ribosomal protein S20
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'V':
Compound: 40S ribosomal protein S21
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'W':
Compound: 40S ribosomal protein S15a
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'X':
Compound: 40S ribosomal protein S23
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'Y':
Compound: 40S ribosomal protein S24
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'Z':
Compound: 40S ribosomal protein S25
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'b':
Compound: 40S ribosomal protein S27
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'c':
Compound: 40S ribosomal protein S28
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'd':
Compound: 40S ribosomal protein S29
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'e':
Compound: 40S ribosomal protein S30
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'f':
Compound: Ubiquitin-40S ribosomal protein S27a
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'g':
Compound: Receptor of activated protein C kinase 1
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6zuog_ - Chain 'x':
Compound: RNA-binding protein PNO1
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Chain 'y':
Compound: RNA-binding protein NOB1
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
- Heterogens: ZN
PDB Chain Sequences:
- Chain '2':
No sequence available.
- Chain 'A':
No sequence available.
- Chain 'B':
No sequence available.
- Chain 'C':
No sequence available.
- Chain 'D':
No sequence available.
- Chain 'E':
No sequence available.
- Chain 'F':
No sequence available.
- Chain 'G':
No sequence available.
- Chain 'H':
No sequence available.
- Chain 'I':
No sequence available.
- Chain 'J':
No sequence available.
- Chain 'K':
No sequence available.
- Chain 'L':
No sequence available.
- Chain 'M':
No sequence available.
- Chain 'N':
No sequence available.
- Chain 'O':
No sequence available.
- Chain 'P':
No sequence available.
- Chain 'Q':
No sequence available.
- Chain 'R':
No sequence available.
- Chain 'S':
No sequence available.
- Chain 'T':
No sequence available.
- Chain 'U':
No sequence available.
- Chain 'V':
No sequence available.
- Chain 'W':
No sequence available.
- Chain 'X':
No sequence available.
- Chain 'Y':
No sequence available.
- Chain 'Z':
No sequence available.
- Chain 'b':
No sequence available.
- Chain 'c':
No sequence available.
- Chain 'd':
No sequence available.
- Chain 'e':
No sequence available.
- Chain 'f':
No sequence available.
- Chain 'g':
Sequence, based on SEQRES records: (download)
>6zuog (g:)
mteqmtlrgtlkghngwvtqiattpqfpdmilsasrdktiimwkltrdetnygipqralr
ghshfvsdvvissdgqfalsgswdgtlrlwdlttgtttrrfvghtkdvlsvafssdnrqi
vsgsrdktiklwntlgvckytvqdeshsewvscvrfspnssnpiivscgwdklvkvwnla
ncklktnhightgylntvtvspdgslcasggkdgqamlwdlnegkhlytldggdiinalc
fspnrywlcaatgpsikiwdlegkiivdelkqevistsskaeppqctslawsadgqtlfa
gytdnlvrvwqvtigtr
Sequence, based on observed residues (ATOM records): (download)
>6zuog (g:)
teqmtlrgtlkghngwvtqiattpqfpdmilsasrdktiimwkltrdetnygipqralrg
hshfvsdvvissdgqfalsgswdgtlrlwdlttgtttrrfvghtkdvlsvafssdnrqiv
sgsrdktiklwntlgvckytvqdeshsewvscvrfspnssnpiivscgwdklvkvwnlan
cklktnhightgylntvtvspdgslcasggkdgqamlwdlnegkhlytldggdiinalcf
spnrywlcaatgpsikiwdlegkiivdelkqevistsskaeppqctslawsadgqtlfag
ytdnlvrvwqvtig
- Chain 'x':
No sequence available.
- Chain 'y':
No sequence available.