PDB entry 6zp2

View 6zp2 on RCSB PDB site
Description: structure of sars-cov-2 spike protein trimer (k986p, v987p, single arg s1/s2 cleavage site) in locked state
Deposited on 2020-07-08, released 2020-07-22
The last revision was dated 2022-03-02, with a file datestamp of 2022-02-25.
Experiment type: EM
Resolution: 3.1 Å
R-factor: N/A
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Spike glycoprotein
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Gene: S, 2
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0DTC2 (4-1131)
      • expression tag (0-3)
      • engineered mutation (976-977)
  • Chain 'B':
    Compound: Spike glycoprotein
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Gene: S, 2
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0DTC2 (4-1131)
      • expression tag (0-3)
      • engineered mutation (976-977)
  • Chain 'C':
    Compound: Spike glycoprotein
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Gene: S, 2
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0DTC2 (4-1131)
      • expression tag (0-3)
      • engineered mutation (976-977)
  • Heterogens: BLA, NAG, EIC

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6zp2A (A:)
etgtqcvnlttrtqlppaytnsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhaih
vsgtngtkrfdnpvlpfndgvyfasteksniirgwifgttldsktqsllivnnatnvvik
vcefqfcndpflgvyyhknnkswmesefrvyssannctfeyvsqpflmdlegkqgnfknl
refvfknidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqtllalhrsyl
tpgdsssgwtagaaayyvgylqprtfllkynengtitdavdcaldplsetkctlksftve
kgiyqtsnfrvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisncvadysvly
nsasfstfkcygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddf
tgcviawnsnnldskvggnynylyrlfrksnlkpferdisteiyqagstpcngvegfncy
fplqsygfqptngvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvnfnfngltgt
gvltesnkkflpfqqfgrdiadttdavrdpqtleilditpcsfggvsvitpgtntsnqva
vlyqdvnctevpvaihadqltptwrvystgsnvfqtragcligaehvnnsyecdipigag
icasyqtqtnsprrarsvasqsiiaytmslgaensvaysnnsiaiptnftisvtteilpv
smtktsvdctmyicgdstecsnlllqygsfctqlnraltgiaveqdkntqevfaqvkqiy
ktppikdfggfnfsqilpdpskpskrsfiedllfnkvtladagfikqygdclgdiaardl
icaqkfngltvlpplltdemiaqytsallagtitsgwtfgagaalqipfamqmayrfngi
gvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqalntlvkqlssn
fgaissvlndilsrldppeaevqidrlitgrlqslqtyvtqqliraaeirasanlaatkm
secvlgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapaichdgkahf
pregvfvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnntvydpl

    Sequence, based on observed residues (ATOM records):
    >6zp2A (A:)
qcvnlttrtqlppaytnsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhaihvkrf
dnpvlpfndgvyfasteksniirgwifgttldsktqsllivnnatnvvikvcefqfcndp
flgvyyhknnkswmesefrvyssannctfeyvsqpflmdlegkqgnfknlrefvfknidg
yfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqtllalhrsyltpgdsssgwt
agaaayyvgylqprtfllkynengtitdavdcaldplsetkctlksftvekgiyqtsnfr
vqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkc
ygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsn
nldskvggnynylyrlfrksnlkpferdisteiyqagstpcngvegfncyfplqsygfqp
tngvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvnfnfngltgtgvltesnkkf
lpfqqfgrdiadttdavrdpqtleilditpcsfggvsvitpgtntsnqvavlyqdvnctt
wrvystgsnvfqtragcligaehvnnsyecdipigagicasyqtsqsiiaytmslgaens
vaysnnsiaiptnftisvtteilpvsmtktsvdctmyicgdstecsnlllqygsfctqln
raltgiaveqdkntqevfaqvkqiyktppikdfggfnfsqilpdpskpskrsfiedllfn
kvtladagfikqygdclgdiaardlicaqkfngltvlpplltdemiaqytsallagtits
gwtfgagaalqipfamqmayrfngigvtqnvlyenqklianqfnsaigkiqdslsstasa
lgklqdvvnqnaqalntlvkqlssnfgaissvlndilsrldppeaevqidrlitgrlqsl
qtyvtqqliraaeirasanlaatkmsecvlgqskrvdfcgkgyhlmsfpqsaphgvvflh
vtyvpaqeknfttapaichdgkahfpregvfvsngthwfvtqrnfyepqiittdntfvsg
ncdvvigivnntvydpl

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6zp2B (B:)
etgtqcvnlttrtqlppaytnsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhaih
vsgtngtkrfdnpvlpfndgvyfasteksniirgwifgttldsktqsllivnnatnvvik
vcefqfcndpflgvyyhknnkswmesefrvyssannctfeyvsqpflmdlegkqgnfknl
refvfknidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqtllalhrsyl
tpgdsssgwtagaaayyvgylqprtfllkynengtitdavdcaldplsetkctlksftve
kgiyqtsnfrvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisncvadysvly
nsasfstfkcygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddf
tgcviawnsnnldskvggnynylyrlfrksnlkpferdisteiyqagstpcngvegfncy
fplqsygfqptngvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvnfnfngltgt
gvltesnkkflpfqqfgrdiadttdavrdpqtleilditpcsfggvsvitpgtntsnqva
vlyqdvnctevpvaihadqltptwrvystgsnvfqtragcligaehvnnsyecdipigag
icasyqtqtnsprrarsvasqsiiaytmslgaensvaysnnsiaiptnftisvtteilpv
smtktsvdctmyicgdstecsnlllqygsfctqlnraltgiaveqdkntqevfaqvkqiy
ktppikdfggfnfsqilpdpskpskrsfiedllfnkvtladagfikqygdclgdiaardl
icaqkfngltvlpplltdemiaqytsallagtitsgwtfgagaalqipfamqmayrfngi
gvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqalntlvkqlssn
fgaissvlndilsrldppeaevqidrlitgrlqslqtyvtqqliraaeirasanlaatkm
secvlgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapaichdgkahf
pregvfvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnntvydpl

    Sequence, based on observed residues (ATOM records):
    >6zp2B (B:)
qcvnlttrtqlppaytnsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhaihvkrf
dnpvlpfndgvyfasteksniirgwifgttldsktqsllivnnatnvvikvcefqfcndp
flgvyyhknnkswmesefrvyssannctfeyvsqpflmdlegkqgnfknlrefvfknidg
yfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqtllalhrsyltpgdsssgwt
agaaayyvgylqprtfllkynengtitdavdcaldplsetkctlksftvekgiyqtsnfr
vqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkc
ygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsn
nldskvggnynylyrlfrksnlkpferdisteiyqagstpcngvegfncyfplqsygfqp
tngvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvnfnfngltgtgvltesnkkf
lpfqqfgrdiadttdavrdpqtleilditpcsfggvsvitpgtntsnqvavlyqdvnctt
wrvystgsnvfqtragcligaehvnnsyecdipigagicasyqtsqsiiaytmslgaens
vaysnnsiaiptnftisvtteilpvsmtktsvdctmyicgdstecsnlllqygsfctqln
raltgiaveqdkntqevfaqvkqiyktppikdfggfnfsqilpdpskpskrsfiedllfn
kvtladagfikqygdclgdiaardlicaqkfngltvlpplltdemiaqytsallagtits
gwtfgagaalqipfamqmayrfngigvtqnvlyenqklianqfnsaigkiqdslsstasa
lgklqdvvnqnaqalntlvkqlssnfgaissvlndilsrldppeaevqidrlitgrlqsl
qtyvtqqliraaeirasanlaatkmsecvlgqskrvdfcgkgyhlmsfpqsaphgvvflh
vtyvpaqeknfttapaichdgkahfpregvfvsngthwfvtqrnfyepqiittdntfvsg
ncdvvigivnntvydpl

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6zp2C (C:)
etgtqcvnlttrtqlppaytnsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhaih
vsgtngtkrfdnpvlpfndgvyfasteksniirgwifgttldsktqsllivnnatnvvik
vcefqfcndpflgvyyhknnkswmesefrvyssannctfeyvsqpflmdlegkqgnfknl
refvfknidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqtllalhrsyl
tpgdsssgwtagaaayyvgylqprtfllkynengtitdavdcaldplsetkctlksftve
kgiyqtsnfrvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisncvadysvly
nsasfstfkcygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddf
tgcviawnsnnldskvggnynylyrlfrksnlkpferdisteiyqagstpcngvegfncy
fplqsygfqptngvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvnfnfngltgt
gvltesnkkflpfqqfgrdiadttdavrdpqtleilditpcsfggvsvitpgtntsnqva
vlyqdvnctevpvaihadqltptwrvystgsnvfqtragcligaehvnnsyecdipigag
icasyqtqtnsprrarsvasqsiiaytmslgaensvaysnnsiaiptnftisvtteilpv
smtktsvdctmyicgdstecsnlllqygsfctqlnraltgiaveqdkntqevfaqvkqiy
ktppikdfggfnfsqilpdpskpskrsfiedllfnkvtladagfikqygdclgdiaardl
icaqkfngltvlpplltdemiaqytsallagtitsgwtfgagaalqipfamqmayrfngi
gvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqalntlvkqlssn
fgaissvlndilsrldppeaevqidrlitgrlqslqtyvtqqliraaeirasanlaatkm
secvlgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapaichdgkahf
pregvfvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnntvydpl

    Sequence, based on observed residues (ATOM records):
    >6zp2C (C:)
qcvnlttrtqlppaytnsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhaihvkrf
dnpvlpfndgvyfasteksniirgwifgttldsktqsllivnnatnvvikvcefqfcndp
flgvyyhknnkswmesefrvyssannctfeyvsqpflmdlegkqgnfknlrefvfknidg
yfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqtllalhrsyltpgdsssgwt
agaaayyvgylqprtfllkynengtitdavdcaldplsetkctlksftvekgiyqtsnfr
vqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkc
ygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsn
nldskvggnynylyrlfrksnlkpferdisteiyqagstpcngvegfncyfplqsygfqp
tngvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvnfnfngltgtgvltesnkkf
lpfqqfgrdiadttdavrdpqtleilditpcsfggvsvitpgtntsnqvavlyqdvnctt
wrvystgsnvfqtragcligaehvnnsyecdipigagicasyqtsqsiiaytmslgaens
vaysnnsiaiptnftisvtteilpvsmtktsvdctmyicgdstecsnlllqygsfctqln
raltgiaveqdkntqevfaqvkqiyktppikdfggfnfsqilpdpskpskrsfiedllfn
kvtladagfikqygdclgdiaardlicaqkfngltvlpplltdemiaqytsallagtits
gwtfgagaalqipfamqmayrfngigvtqnvlyenqklianqfnsaigkiqdslsstasa
lgklqdvvnqnaqalntlvkqlssnfgaissvlndilsrldppeaevqidrlitgrlqsl
qtyvtqqliraaeirasanlaatkmsecvlgqskrvdfcgkgyhlmsfpqsaphgvvflh
vtyvpaqeknfttapaichdgkahfpregvfvsngthwfvtqrnfyepqiittdntfvsg
ncdvvigivnntvydpl