PDB entry 6zoy

View 6zoy on RCSB PDB site
Description: structure of disulphide-stabilized sars-cov-2 spike protein trimer (x1 disulphide-bond mutant, s383c, d985c, k986p, v987p, single arg s1/s2 cleavage site) in closed state
Deposited on 2020-07-08, released 2020-07-22
The last revision was dated 2021-06-02, with a file datestamp of 2021-05-28.
Experiment type: EM
Resolution: 3.1 Å
R-factor: N/A
AEROSPACI score: 0.22 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Spike glycoprotein
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Gene: S, 2
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0DTC2
      • engineered mutation (373)
      • engineered mutation (971-973)
  • Chain 'B':
    Compound: Spike glycoprotein
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Gene: S, 2
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0DTC2
      • engineered mutation (373)
      • engineered mutation (971-973)
  • Chain 'C':
    Compound: Spike glycoprotein
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Gene: S, 2
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0DTC2
      • engineered mutation (373)
      • engineered mutation (971-973)
  • Heterogens: NAG

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6zoyA (A:)
etgtqcvnlttrtqlppaytnsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhaih
vsgtngtkrfdnpvlpfndgvyfasteksniirgwifgttldsktqsllivnnatnvvik
vcefqfcndpflgvyyhknnkswmesefrvyssannctfeyvsqpflmdlegkqgnfknl
refvfknidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqtllalhrsyl
tpgdsssgwtagaaayyvgylqprtfllkynengtitdavdcaldplsetkctlksftve
kgiyqtsnfrvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisncvadysvly
nsasfstfkcygvcptklndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddf
tgcviawnsnnldskvggnynylyrlfrksnlkpferdisteiyqagstpcngvegfncy
fplqsygfqptngvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvnfnfngltgt
gvltesnkkflpfqqfgrdiadttdavrdpqtleilditpcsfggvsvitpgtntsnqva
vlyqdvnctevpvaihadqltptwrvystgsnvfqtragcligaehvnnsyecdipigag
icasyqtqtnsrsvasqsiiaytmslgaensvaysnnsiaiptnftisvtteilpvsmtk
tsvdctmyicgdstecsnlllqygsfctqlnraltgiaveqdkntqevfaqvkqiyktpp
ikdfggfnfsqilpdpskpskrsfiedllfnkvtladagfikqygdclgdiaardlicaq
kfngltvlpplltdemiaqytsallagtitsgwtfgagaalqipfamqmayrfngigvtq
nvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqalntlvkqlssnfgai
ssvlndilsrlcppeaevqidrlitgrlqslqtyvtqqliraaeirasanlaatkmsecv
lgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapaichdgkahfpreg
vfvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnntvydplqpeldsfkeeld
kyfknhtspdvdlgdisginasvvniqkeidrlnevaknlneslidlqelgkyeqyikgs
grenlyfqggggsgyipeaprdgqayvrkdgewvllstflghhhhhh

    Sequence, based on observed residues (ATOM records):
    >6zoyA (A:)
aytnsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhaihdnpvlpfndgvyfaste
ksniirgwifgttldsktqsllivnnatnvvikvcefqfcndpflgvmesefrvyssann
ctfeyvsqpflmdlegkqgnfknlrefvfknidgyfkiyskhtpinlvrdlpqgfsalep
lvdlpiginitrfqtllalhaaayyvgylqprtfllkynengtitdavdcaldplsetkc
tlksftvekgiyqtsnfrvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisnc
vadysvlynsasfstfkcygvcptklndlcftnvyadsfvirgdevrqiapgqtgkiady
nyklpddftgcviawnsnnldskvggnynylyrlfrksnlkpferdisteiyqagstpcn
gvegfncyfplqsygfqptngvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvnf
nfngltgtgvltesnkkflpfqqfgrdiadttdavrdpqtleilditpcsfggvsvitpg
tntsnqvavlyqdvnctevnvfqtragcligaehvnnsyecdipigagicasyqtsqsii
aytmslgaensvaysnnsiaiptnftisvtteilpvsmtktsvdctmyicgdstecsnll
lqygsfctqlnraltgiaveqdkntqevfaqvkqiyktppikdfggfnfsqilpdpskps
krsfiedllfnkvtkfngltvlpplltdemiaqytsallagtitsgwtfgagaalqipfa
mqmayrfngigvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqal
ntlvkqlssnfgaissvlndilsrlcppeaevqidrlitgrlqslqtyvtqqliraaeir
asanlaatkmsecvlgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttap
aichdgkahfpregvfvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnntvyd
p

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6zoyB (B:)
etgtqcvnlttrtqlppaytnsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhaih
vsgtngtkrfdnpvlpfndgvyfasteksniirgwifgttldsktqsllivnnatnvvik
vcefqfcndpflgvyyhknnkswmesefrvyssannctfeyvsqpflmdlegkqgnfknl
refvfknidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqtllalhrsyl
tpgdsssgwtagaaayyvgylqprtfllkynengtitdavdcaldplsetkctlksftve
kgiyqtsnfrvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisncvadysvly
nsasfstfkcygvcptklndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddf
tgcviawnsnnldskvggnynylyrlfrksnlkpferdisteiyqagstpcngvegfncy
fplqsygfqptngvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvnfnfngltgt
gvltesnkkflpfqqfgrdiadttdavrdpqtleilditpcsfggvsvitpgtntsnqva
vlyqdvnctevpvaihadqltptwrvystgsnvfqtragcligaehvnnsyecdipigag
icasyqtqtnsrsvasqsiiaytmslgaensvaysnnsiaiptnftisvtteilpvsmtk
tsvdctmyicgdstecsnlllqygsfctqlnraltgiaveqdkntqevfaqvkqiyktpp
ikdfggfnfsqilpdpskpskrsfiedllfnkvtladagfikqygdclgdiaardlicaq
kfngltvlpplltdemiaqytsallagtitsgwtfgagaalqipfamqmayrfngigvtq
nvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqalntlvkqlssnfgai
ssvlndilsrlcppeaevqidrlitgrlqslqtyvtqqliraaeirasanlaatkmsecv
lgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapaichdgkahfpreg
vfvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnntvydplqpeldsfkeeld
kyfknhtspdvdlgdisginasvvniqkeidrlnevaknlneslidlqelgkyeqyikgs
grenlyfqggggsgyipeaprdgqayvrkdgewvllstflghhhhhh

    Sequence, based on observed residues (ATOM records):
    >6zoyB (B:)
aytnsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhaihdnpvlpfndgvyfaste
ksniirgwifgttldsktqsllivnnatnvvikvcefqfcndpflgvmesefrvyssann
ctfeyvsqpflmdlegkqgnfknlrefvfknidgyfkiyskhtpinlvrdlpqgfsalep
lvdlpiginitrfqtllalhaaayyvgylqprtfllkynengtitdavdcaldplsetkc
tlksftvekgiyqtsnfrvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisnc
vadysvlynsasfstfkcygvcptklndlcftnvyadsfvirgdevrqiapgqtgkiady
nyklpddftgcviawnsnnldskvggnynylyrlfrksnlkpferdisteiyqagstpcn
gvegfncyfplqsygfqptngvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvnf
nfngltgtgvltesnkkflpfqqfgrdiadttdavrdpqtleilditpcsfggvsvitpg
tntsnqvavlyqdvnctevnvfqtragcligaehvnnsyecdipigagicasyqtsqsii
aytmslgaensvaysnnsiaiptnftisvtteilpvsmtktsvdctmyicgdstecsnll
lqygsfctqlnraltgiaveqdkntqevfaqvkqiyktppikdfggfnfsqilpdpskps
krsfiedllfnkvtkfngltvlpplltdemiaqytsallagtitsgwtfgagaalqipfa
mqmayrfngigvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqal
ntlvkqlssnfgaissvlndilsrlcppeaevqidrlitgrlqslqtyvtqqliraaeir
asanlaatkmsecvlgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttap
aichdgkahfpregvfvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnntvyd
p

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6zoyC (C:)
etgtqcvnlttrtqlppaytnsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhaih
vsgtngtkrfdnpvlpfndgvyfasteksniirgwifgttldsktqsllivnnatnvvik
vcefqfcndpflgvyyhknnkswmesefrvyssannctfeyvsqpflmdlegkqgnfknl
refvfknidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqtllalhrsyl
tpgdsssgwtagaaayyvgylqprtfllkynengtitdavdcaldplsetkctlksftve
kgiyqtsnfrvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisncvadysvly
nsasfstfkcygvcptklndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddf
tgcviawnsnnldskvggnynylyrlfrksnlkpferdisteiyqagstpcngvegfncy
fplqsygfqptngvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvnfnfngltgt
gvltesnkkflpfqqfgrdiadttdavrdpqtleilditpcsfggvsvitpgtntsnqva
vlyqdvnctevpvaihadqltptwrvystgsnvfqtragcligaehvnnsyecdipigag
icasyqtqtnsrsvasqsiiaytmslgaensvaysnnsiaiptnftisvtteilpvsmtk
tsvdctmyicgdstecsnlllqygsfctqlnraltgiaveqdkntqevfaqvkqiyktpp
ikdfggfnfsqilpdpskpskrsfiedllfnkvtladagfikqygdclgdiaardlicaq
kfngltvlpplltdemiaqytsallagtitsgwtfgagaalqipfamqmayrfngigvtq
nvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqalntlvkqlssnfgai
ssvlndilsrlcppeaevqidrlitgrlqslqtyvtqqliraaeirasanlaatkmsecv
lgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapaichdgkahfpreg
vfvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnntvydplqpeldsfkeeld
kyfknhtspdvdlgdisginasvvniqkeidrlnevaknlneslidlqelgkyeqyikgs
grenlyfqggggsgyipeaprdgqayvrkdgewvllstflghhhhhh

    Sequence, based on observed residues (ATOM records):
    >6zoyC (C:)
aytnsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhaihdnpvlpfndgvyfaste
ksniirgwifgttldsktqsllivnnatnvvikvcefqfcndpflgvmesefrvyssann
ctfeyvsqpflmdlegkqgnfknlrefvfknidgyfkiyskhtpinlvrdlpqgfsalep
lvdlpiginitrfqtllalhaaayyvgylqprtfllkynengtitdavdcaldplsetkc
tlksftvekgiyqtsnfrvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisnc
vadysvlynsasfstfkcygvcptklndlcftnvyadsfvirgdevrqiapgqtgkiady
nyklpddftgcviawnsnnldskvggnynylyrlfrksnlkpferdisteiyqagstpcn
gvegfncyfplqsygfqptngvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvnf
nfngltgtgvltesnkkflpfqqfgrdiadttdavrdpqtleilditpcsfggvsvitpg
tntsnqvavlyqdvnctevnvfqtragcligaehvnnsyecdipigagicasyqtsqsii
aytmslgaensvaysnnsiaiptnftisvtteilpvsmtktsvdctmyicgdstecsnll
lqygsfctqlnraltgiaveqdkntqevfaqvkqiyktppikdfggfnfsqilpdpskps
krsfiedllfnkvtkfngltvlpplltdemiaqytsallagtitsgwtfgagaalqipfa
mqmayrfngigvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqal
ntlvkqlssnfgaissvlndilsrlcppeaevqidrlitgrlqslqtyvtqqliraaeir
asanlaatkmsecvlgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttap
aichdgkahfpregvfvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnntvyd
p