SCOPe 2.08: Structural Classification of Proteins

PDB entry 6zoo

View 6zoo on RCSB PDB site
Description: Photosystem I reduced Plastocyanin Complex
Class: photosynthesis
Keywords: Photosystem I, membrane protein, PHOTOSYNTHESIS
Deposited on 2020-07-07, released 2021-06-16
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-07-07, with a file datestamp of 2021-07-02.
Experiment type: EM
Resolution: 2.74 Å
R-factor: N/A
AEROSPACI score: 0.23 (click here for full SPACI score report)

Chains and heterogens:

Chain '1':
Compound: Chlorophyll a-b binding protein 6, chloroplastic
Species: PISUM SATIVUM [TaxId:3888]
Database cross-references and differences (RAF-indexed):
- Uniprot Q01667 (0-192)
  - conflict (0)
  - conflict (5)
  - conflict (9)
  - conflict (25)
  - conflict (31)
  - conflict (36)
  - conflict (62)
  - conflict (96)
  - conflict (101)
  - conflict (137-138)
  - conflict (140)
  - conflict (142)
  - conflict (145)
  - conflict (158)
  - conflict (185)
  - conflict (188-190)
Domains in SCOPe 2.08: d6zoo1_
Chain '2':
Compound: Chlorophyll a-b binding protein, chloroplastic
Species: PISUM SATIVUM [TaxId:3888]
Database cross-references and differences (RAF-indexed):
- Uniprot Q41038 (0-207)
Domains in SCOPe 2.08: d6zoo2_
Chain '3':
Compound: Chlorophyll a-b binding protein 3, chloroplastic
Species: PISUM SATIVUM [TaxId:3888]
Database cross-references and differences (RAF-indexed):
- Uniprot Q32904 (0-220)
Domains in SCOPe 2.08: d6zoo3_
Chain '4':
Compound: chlorophyll a-b binding protein p4, chloroplastic
Species: PISUM SATIVUM [TaxId:3888]
Database cross-references and differences (RAF-indexed):
- Uniprot Q9SQL2 (0-197)
  - conflict (37)
  - conflict (76)
  - conflict (97)
Domains in SCOPe 2.08: d6zoo4_
Chain 'A':
Compound: photosystem I p700 chlorophyll a apoprotein a1
Species: PISUM SATIVUM [TaxId:3888]
Database cross-references and differences (RAF-indexed):
- Uniprot A0A0F6NFW5 (0-742)
Domains in SCOPe 2.08: d6zooa_
Chain 'B':
Compound: photosystem I p700 chlorophyll a apoprotein a2
Species: PISUM SATIVUM [TaxId:3888]
Database cross-references and differences (RAF-indexed):
- Uniprot A0A0F6NGI2 (0-732)
Domains in SCOPe 2.08: d6zoob_
Chain 'C':
Compound: photosystem I iron-sulfur center
Species: PISUM SATIVUM [TaxId:3888]
Database cross-references and differences (RAF-indexed):
- Uniprot P10793 (0-79)
Domains in SCOPe 2.08: d6zooc_
Chain 'D':
Compound: PsaD
Species: PISUM SATIVUM [TaxId:3888]
Database cross-references and differences (RAF-indexed):
- Uniprot E1C9K8 (5-142)
  - insertion (0-4)
  - conflict (37)
  - conflict (92)
  - conflict (111)
  - conflict (118)
Domains in SCOPe 2.08: d6zood_
Chain 'E':
Compound: Putative uncharacterized protein
Species: PISUM SATIVUM [TaxId:3888]
Database cross-references and differences (RAF-indexed):
- Uniprot E1C9K6 (2-65)
  - insertion (0-1)
  - conflict (15)
  - conflict (61-62)
  - conflict (65)
Domains in SCOPe 2.08: d6zooe1, d6zooe2
Chain 'F':
Compound: Photosystem I reaction center subunit III
Species: PISUM SATIVUM [TaxId:3888]
Database cross-references and differences (RAF-indexed):
- Uniprot A0A0M3KL12 (0-153)
  - conflict (2)
  - conflict (9)
  - conflict (30)
  - conflict (33)
  - conflict (56)
  - conflict (110)
  - conflict (126-127)
Domains in SCOPe 2.08: d6zoof_
Chain 'G':
Compound: photosystem I reaction center
Species: PISUM SATIVUM [TaxId:3888]
Database cross-references and differences (RAF-indexed):
- Uniprot A0A0M3KL13 (0-96)
  - conflict (48)
  - conflict (54-57)
  - insertion (60-63)
  - conflict (64-67)
Chain 'H':
Compound: Photosystem I reaction center subunit VI,Photosystem I reaction center subunit VI
Species: PISUM SATIVUM [TaxId:3888]
Database cross-references and differences (RAF-indexed):
- PDB 6ZOO (0-92)
Chain 'I':
Compound: Photosystem I reaction center subunit VIII
Species: PISUM SATIVUM [TaxId:3888]
Database cross-references and differences (RAF-indexed):
- Uniprot P17227 (0-30)
Chain 'J':
Compound: Photosystem I reaction center subunit IX
Species: PISUM SATIVUM [TaxId:3888]
Database cross-references and differences (RAF-indexed):
- Uniprot D5MAL3 (0-41)
  - conflict (31)
Domains in SCOPe 2.08: d6zooj_
Chain 'K':
Compound: Photosystem I reaction center subunit X psaK
Species: PISUM SATIVUM [TaxId:3888]
Database cross-references and differences (RAF-indexed):
- Uniprot E1C9L3 (0-80)
  - conflict (40)
Chain 'L':
Compound: PsaL domain-containing protein
Species: PISUM SATIVUM [TaxId:3888]
Database cross-references and differences (RAF-indexed):
- PDB 6ZOO (0-158)
Domains in SCOPe 2.08: d6zool_
Chain 'P':
Compound: Plastocyanin, chloroplastic
Species: PISUM SATIVUM [TaxId:3888]
Database cross-references and differences (RAF-indexed):
- Uniprot P16002 (0-98)
Domains in SCOPe 2.08: d6zoop_
Heterogens: CL0, CLA, PQN, SF4, BCR, LHG, LMT, LMG, CA, DGD, LUT, CHL, XAT, 3PH, CU, HOH

PDB Chain Sequences:

Chain '1':
Sequence; same for both SEQRES and ATOM records: (download)

>6zoo1 (1:)
dwmpgqprpsyldgsapgdfgfdplrlgevpenlerfkeselihcrwamlavpgilvpea
lglgnwvkaqewaalpggqatylgnpvpwgtlptilvieflsiafvehqrsmekdpekkk
ypggafdplgyskdpkkfheykikevkngrlallafvgicvqqsaypgtgplenlathla
dpwhntignvlip

Chain '2':
Sequence; same for both SEQRES and ATOM records: (download)

>6zoo2 (2:)
tvaepdrplwfpgstpppwldgslpgdfgfdplglgsdpeslrwnvqaelvhsrwamlga
agifipefltklgilntpswytageqeyftdtttlfivelvfigwaegrrwadilnpgcv
ntdpifpnnkltgtdvgypgglwfdplgwgsaspqklkelrtkeikngrlamlavmgawf
qhiytgtgpidnlfahladpghatifaa

Chain '3':
Sequence; same for both SEQRES and ATOM records: (download)

>6zoo3 (3:)
rplwfaskqslsyldgslpgdygfdplglsdpegtggfieprwlaygevingrfamlgav
gaiapeylgkvglipqetalawfqtgvippagtynywadnytlfvlemalmgfaehrrfq
dwakpgsmgkqyflglekgfggsgnpaypggpffnplgfgkdekslkelklkevkngrla
mlailgyfiqglvtgvgpyqnlldhvadpvnnnvltslkfh

Chain '4':
Sequence; same for both SEQRES and ATOM records: (download)

>6zoo4 (4:)
kkgewlpglaspgyltgslpgdngfdplglaedpenlkwfvqaelvngrwamlgvagmll
pevftsigiinvpkwydagkeeyfassstlfviefilfhyveirrwqdiknpgsvnqdpi
fkqyslpagevgypggifnplnfaptleakekeiangrlamlaflgfiiqhnvtgkgpfd
nllqhisdpwhntivqtl

Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)

>6zooA (A:)
pevkilvdrdpiktsfeqwakpghfsrtiakgpdtttwiwnlhadahdfdshtsdleeis
rkvfsahfgqlsiiflwlsgmyfhgarfsnyeawlndptxirpsaqvvwpivgqeilngd
vgggfrgiqitsgffqiwrasgitselqlyctaigalvfaalmlfagwfhyhkaapklvw
fqdvesmlnhhlagllglgslswaghqvhvslpinqflnagvdpkeiplphefilnrdll
aqlypsfaegatpfftlnwskyadfltfrggldpltgglwltdiahhhlaiailfliagh
myrtnwgighgikdileahkgpftgqghkglyeilttswhaqlsinlamlgsltiivahh
myamppypylatdygtqlslfthhmwiggflivgaaahaaifmvrdydpttryndlldrv
lrhrdaiishlnwvciflgfhsfglyihndtmsalgrpqdmfsdtaiqlqpvfaqwiqnt
halapgttapgattstsltwgggdlvsvggkvallpiplgtadflvhhihaftihvtvli
llkgvlfarssrlipdkanlgfrfpcdgpgrggtcqvsawdhvflglfwmynaisvvifh
fswkmqsdvwgsindqgvvtxitggnfaqssitingwlrdflwaqasqviqsygsslsay
glfflgahfvwafslmflfsgrgywqeliesivwahnklkvapatqpralsivqgravgv
thyllggiattwafflariiavg

Chain 'B':
Sequence; same for both SEQRES and ATOM records: (download)

>6zooB (B:)
alrfprfsqglaqdpttrriwfgiatahdfeshdditegrlyqnifashfgqlaiiflwt
sgnlfhvawqgnfeawvqdplhvrpiahaiwdphfgqpaveaftrggalgpvniaysgvy
qwwytiglrtnedlytgaifllflsfisllagwlhlqpkwkpsvswfknaesrlnhhlsg
lfgvsslawaghlvhvaipgsrgeyvrwnnflsvlphpqglgplftgqwnlyaqnpdssn
hlfstsqgagtailtllggfhpqtqslwltdmahhhlaiailfligghmyrtnfgighsi
kyileahippggrlgrghkglydtinnsihfqlglalaslgvitslvaqhmyslpayafi
aqdfttqaalythhqyiagfimtgafahgaiffirdynpeqnadnvlarmlehkeaiish
lswaslflgfhtlglyvhndvmlafgtpekqiliepifaqwiqsahgktsygfdvllsst
nspalnagrsiwlpgwlnainensnslfltigpgdflvhhaialglhtttlilvkgalda
rgsklmpdkkdfgysfpcdgpgrggtcdisawdafylavfwmlntigwvtfywhwkhitl
wqgnvsqfnesstylmgwlrdylwlnssqlingynpfgmnslsvwawmflfghlvwatgf
mfliswrgywqelietlawahertplanlirwrdkpvalsivqarlvglvhfsvgyifty
aafliastsgkfg

Chain 'C':
Sequence; same for both SEQRES and ATOM records: (download)

>6zooC (C:)
shsvkiydtcigctqcvracptdvlemipwggckakqiasaprtedcvgckrcesacptd
flsvrvylwhettrsmglay

Chain 'D':
Sequence; same for both SEQRES and ATOM records: (download)

>6zooD (D:)
gftppeldpntpspifggstggllrkaqveefyvitwespkeqifemptggaaimregpn
llklarkeqclalgtrlrskykikyqfyrvfpsgevqylhpkdgvypekvnpgrqgvgvn
frsigknvspievkftgkqpydl

Chain 'E':
Sequence; same for both SEQRES and ATOM records: (download)

>6zooE (E:)
ppigpkrgakvkilrqesywykgtgsvvavdqdpntrypvvvrfnkvnyanvstnnyald
eveevk

Chain 'F':
Sequence; same for both SEQRES and ATOM records: (download)

>6zooF (F:)
diagltpckdskqfakrekqsikklesslklyapdsapalainatiektkrrfdnygkqg
llcgadglphlivsgdqrhwgefitpgilflyiagwigwvgrsyliairddkkptqkeii
idvplatglvfrgfswpiaayrellngelvakdv

Chain 'G':
No sequence available.
Chain 'H':
No sequence available.
Chain 'I':
No sequence available.
Chain 'J':
Sequence; same for both SEQRES and ATOM records: (download)
```
>6zooJ (J:)
mrdlktylsvapvastlwfaalagllieinrffpdaltfpff
```
Chain 'K':
No sequence available.

Chain 'L':
Sequence; same for both SEQRES and ATOM records: (download)

>6zooL (L:)
yqvvqpingdpfigsletpvtssplvawylsnlpgyrtavnpllrgievglahgfllvgp
fvkagplrnteiagqagslaagglvvilsicltiygissfnegdpstapsltltgrkkqp
dqlqtadgwakftggfffggisgvtwaffllyvldlpyf

Chain 'P':
Sequence; same for both SEQRES and ATOM records: (download)

>6zooP (P:)
vevllgasdgglafvpsslevsagetivfknnagfphnvvfdedeipagvdaskismpee
dllnapgetysvkldakgtykfycsphqgagmvgqvtvn