PDB entry 6zol

View 6zol on RCSB PDB site
Description: SARS-CoV-2-Nsp1-40S complex, focused on head
Class: translation
Keywords: inhibitor, mRNA channel, 40S ribosomal subunit, TRANSLATION
Deposited on 2020-07-07, released 2020-07-22
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-02-10, with a file datestamp of 2021-02-05.
Experiment type: EM
Resolution: 2.8 Å
R-factor: N/A
AEROSPACI score: 0.23 (click here for full SPACI score report)

Chains and heterogens:

• Chain '2':
  Compound: 18S Ribosomal RNA
  Species: Homo sapiens [TaxId:9606]
  
• Chain 'D':
  Compound: 40S ribosomal protein S3
  Species: Homo sapiens [TaxId:9606]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P23396
• Chain 'F':
  Compound: 40S ribosomal protein S5
  Species: Homo sapiens [TaxId:9606]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P46782 (Start-203)
• Chain 'K':
  Compound: 40S ribosomal protein S10
  Species: Homo sapiens [TaxId:9606]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P46783 (0-End)
• Chain 'M':
  Compound: 40s ribosomal protein s12
  Species: Homo sapiens [TaxId:9606]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P25398 (Start-131)
• Chain 'P':
  Compound: 40S ribosomal protein S15
  Species: Homo sapiens [TaxId:9606]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P62841
• Chain 'Q':
  Compound: 40S ribosomal protein S16
  Species: Homo sapiens [TaxId:9606]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P62249 (Start-145)
• Chain 'R':
  Compound: 40S ribosomal protein S17
  Species: Homo sapiens [TaxId:9606]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P08708
• Chain 'S':
  Compound: 40S ribosomal protein S18
  Species: Homo sapiens [TaxId:9606]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P62269
• Chain 'T':
  Compound: 40S ribosomal protein S19
  Species: Homo sapiens [TaxId:9606]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P39019 (Start-144)
• Chain 'U':
  Compound: 40S ribosomal protein S20
  Species: Homo sapiens [TaxId:9606]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P60866
• Chain 'Z':
  Compound: 40S ribosomal protein S25
  Species: Homo sapiens [TaxId:9606]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P62851
• Chain 'c':
  Compound: 40S ribosomal protein S28
  Species: Homo sapiens [TaxId:9606]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P62857 (0-60)
• Chain 'd':
  Compound: 40S ribosomal protein S29
  Species: Homo sapiens [TaxId:9606]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P62273 (0-54)
• Chain 'f':
  Compound: Ribosomal protein S27a
  Species: Homo sapiens [TaxId:9606]
  Database cross-references and differences (RAF-indexed):
  • Uniprot Q5RKT7 (0-71)
• Chain 'g':
  Compound: Receptor of activated protein C kinase 1
  Species: Homo sapiens [TaxId:9606]
  Database cross-references and differences (RAF-indexed):
  • Uniprot P63244 (Start-314)
  Domains in SCOPe 2.08: d6zolg_
• Heterogens: MG, ZN

PDB Chain Sequences:

• Chain '2':
  No sequence available.
  
  
• Chain 'D':
  No sequence available.
  
  
• Chain 'F':
  No sequence available.
  
  
• Chain 'K':
  No sequence available.
  
  
• Chain 'M':
  No sequence available.
  
  
• Chain 'P':
  No sequence available.
  
  
• Chain 'Q':
  No sequence available.
  
  
• Chain 'R':
  No sequence available.
  
  
• Chain 'S':
  No sequence available.
  
  
• Chain 'T':
  No sequence available.
  
  
• Chain 'U':
  No sequence available.
  
  
• Chain 'Z':
  No sequence available.
  
  
• Chain 'c':
  No sequence available.
  
  
• Chain 'd':
  No sequence available.
  
  
• Chain 'f':
  No sequence available.
  
  
• Chain 'g':
  Sequence, based on SEQRES records: (download)
  

  >6zolg (g:)
  mteqmtlrgtlkghngwvtqiattpqfpdmilsasrdktiimwkltrdetnygipqralr
  ghshfvsdvvissdgqfalsgswdgtlrlwdlttgtttrrfvghtkdvlsvafssdnrqi
  vsgsrdktiklwntlgvckytvqdeshsewvscvrfspnssnpiivscgwdklvkvwnla
  ncklktnhightgylntvtvspdgslcasggkdgqamlwdlnegkhlytldggdiinalc
  fspnrywlcaatgpsikiwdlegkiivdelkqevistsskaeppqctslawsadgqtlfa
  gytdnlvrvwqvtig
  

  
  Sequence, based on observed residues (ATOM records): (download)
  

  >6zolg (g:)
  teqmtlrgtlkghngwvtqiattpqfpdmilsasrdktiimwkltrdetnygipqralrg
  hshfvsdvvissdgqfalsgswdgtlrlwdlttgtttrrfvghtkdvlsvafssdnrqiv
  sgsrdktiklwntlgvckytvqdeshsewvscvrfspnssnpiivscgwdklvkvwnlan
  cklktnhightgylntvtvspdgslcasggkdgqamlwdlnegkhlytldggdiinalcf
  spnrywlcaatgpsikiwdlegkiivdelkqevistsskaeppqctslawsadgqtlfag
  ytdnlvrvwqvtig