PDB entry 6zng

View 6zng on RCSB PDB site
Description: maeb full-length acetyl-coa bound state
Deposited on 2020-07-06, released 2021-02-17
The last revision was dated 2021-03-17, with a file datestamp of 2021-03-12.
Experiment type: XRAY
Resolution: 2.72 Å
R-factor: N/A
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: NADP-dependent malate dehydrogenase,Malate dehydrogenase
    Species: Bdellovibrio bacteriovorus (strain ATCC 15356 / DSM 50701 / NCIB 9529 / HD100) [TaxId:264462]
    Gene: mdh, Bd1833
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6MM14 (Start-130)
      • linker (131-134)
    • Uniprot Q6MM15 (135-End)
  • Chain 'B':
    Compound: NADP-dependent malate dehydrogenase,Malate dehydrogenase
    Species: Bdellovibrio bacteriovorus (strain ATCC 15356 / DSM 50701 / NCIB 9529 / HD100) [TaxId:264462]
    Gene: mdh, Bd1833
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6MM14 (Start-130)
      • linker (131-134)
    • Uniprot Q6MM15 (135-End)
  • Chain 'C':
    Compound: NADP-dependent malate dehydrogenase,Malate dehydrogenase
    Species: Bdellovibrio bacteriovorus (strain ATCC 15356 / DSM 50701 / NCIB 9529 / HD100) [TaxId:264462]
    Gene: mdh, Bd1833
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6MM14 (Start-130)
      • linker (131-134)
    • Uniprot Q6MM15 (135-End)
  • Chain 'D':
    Compound: NADP-dependent malate dehydrogenase,Malate dehydrogenase
    Species: Bdellovibrio bacteriovorus (strain ATCC 15356 / DSM 50701 / NCIB 9529 / HD100) [TaxId:264462]
    Gene: mdh, Bd1833
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6MM14 (Start-130)
      • linker (131-134)
    • Uniprot Q6MM15 (135-End)
  • Chain 'E':
    Compound: NADP-dependent malate dehydrogenase,Malate dehydrogenase
    Species: Bdellovibrio bacteriovorus (strain ATCC 15356 / DSM 50701 / NCIB 9529 / HD100) [TaxId:264462]
    Gene: mdh, Bd1833
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6MM14 (Start-130)
      • linker (131-134)
    • Uniprot Q6MM15 (135-End)
  • Chain 'F':
    Compound: NADP-dependent malate dehydrogenase,Malate dehydrogenase
    Species: Bdellovibrio bacteriovorus (strain ATCC 15356 / DSM 50701 / NCIB 9529 / HD100) [TaxId:264462]
    Gene: mdh, Bd1833
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q6MM14 (Start-130)
      • linker (131-134)
    • Uniprot Q6MM15 (135-End)
  • Heterogens: ACO

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6zngA (A:)
mgsshhhhhhsmdnktetkiepktgttnfdqeallyhqqgkpgkievisskpcatekdls
layspgvaapckaiakdpakvydytakgnlvavisngtavlglgnigpaagkpvmegkgi
lfkqfagidvfdievaatdvdvfcnavrvleptfgginledikapecfeieerlkkemni
pvfhddqhgtaivsgaallnacsitnrkmetvrivvngagasanscakifialgarreni
imcdsqgviykgrtagmnkykeyfaseteartltealrgadvfvglsvagaltpemlkdm
akdpiifamanpepeitpdkaraarpdaiiatgrsdypnqvnnvlgfpsifrgaldtrst
qineemklaavhalaklaredvpdkvsatyggksfkfgrdylipkpfdtrvllwvapeva
kaamksgvatraiedwdqyreslealqgpskvfirsainrvhqnsaanggelprivfpeg
tstkvlkalatlveekicqpillgypervkekikaldipllndvsivhpsshpkyfsfve
klyslrqrkginlgeaerlmadpnyfaammvnqgeadgmvsgssinyadavrpilqtigv
ykegipaglnfvlledkflvladttvnlnptaeqcaqialqaakiveyfgieprvamlsy
snfsgaegtprkmkkaaeiarslrpdlmiegdmqadtavnpeimerlfpfsglkgganvl
vfpnlessniaykliqqigkaevigpfltgvrrsanvlqrtttvdgivnsvvftaleaqy
ikevlksrgkk

    Sequence, based on observed residues (ATOM records):
    >6zngA (A:)
ttnfdqeallyhqqgkpgkievisskpcatekdlslayspgvaapckaiakdpakvydyt
akgnlvavisngtavlglgnigpaagkpvmegkgilfkqfagidvfdievaatdvdvfcn
avrvleptfgginledikapecfeieerlkkemnipvfhddqhgtaivsgaallnacsit
nrkmetvrivvngagasanscakifialgarreniimcdsqgviykgrtagmnkykeyfa
seteartltealrgadvfvglsvagaltpemlkdmakdpiifamanpepeitpdkaraar
pdaiiatgrsdypnqvnnvlgfpsifrgaldtrstqineemklaavhalaklaredfkfg
rdylipkpfdtrvllwvapevakaamksgvatraiedwdqyreslealqgpskvfirsai
nrvhqnsaanggelprivfpegtstkvlkalatlveekicqpillgypervkekikaldi
pllndvsivhpsshpkyfsfveklyslrqrkginlgeaerlmadpnyfaammvnqgeadg
mvsgssinyadavrpilqtigvykegipaglnfvlledkflvladttvnlnptaeqcaqi
alqaakiveyfgieprvamlsysnfsgaegtprkmkkaaeiarslrpdlmiegdmqadta
vnpeimerlfpfsglkgganvlvfpnlessniaykliqqigkaevigpfltgvrrsanvl
qrtttvdgivnsvvftaleaqyikevlks

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6zngB (B:)
mgsshhhhhhsmdnktetkiepktgttnfdqeallyhqqgkpgkievisskpcatekdls
layspgvaapckaiakdpakvydytakgnlvavisngtavlglgnigpaagkpvmegkgi
lfkqfagidvfdievaatdvdvfcnavrvleptfgginledikapecfeieerlkkemni
pvfhddqhgtaivsgaallnacsitnrkmetvrivvngagasanscakifialgarreni
imcdsqgviykgrtagmnkykeyfaseteartltealrgadvfvglsvagaltpemlkdm
akdpiifamanpepeitpdkaraarpdaiiatgrsdypnqvnnvlgfpsifrgaldtrst
qineemklaavhalaklaredvpdkvsatyggksfkfgrdylipkpfdtrvllwvapeva
kaamksgvatraiedwdqyreslealqgpskvfirsainrvhqnsaanggelprivfpeg
tstkvlkalatlveekicqpillgypervkekikaldipllndvsivhpsshpkyfsfve
klyslrqrkginlgeaerlmadpnyfaammvnqgeadgmvsgssinyadavrpilqtigv
ykegipaglnfvlledkflvladttvnlnptaeqcaqialqaakiveyfgieprvamlsy
snfsgaegtprkmkkaaeiarslrpdlmiegdmqadtavnpeimerlfpfsglkgganvl
vfpnlessniaykliqqigkaevigpfltgvrrsanvlqrtttvdgivnsvvftaleaqy
ikevlksrgkk

    Sequence, based on observed residues (ATOM records):
    >6zngB (B:)
tnfdqeallyhqqgkpgkievisskpcatekdlslayspgvaapckaiakdpakvydyta
kgnlvavisngtavlglgnigpaagkpvmegkgilfkqfagidvfdievaatdvdvfcna
vrvleptfgginledikapecfeieerlkkemnipvfhddqhgtaivsgaallnacsitn
rkmetvrivvngagasanscakifialgarreniimcdsqgviykgrtagmnkykeyfas
eteartltealrgadvfvglsvagaltpemlkdmakdpiifamanpepeitpdkaraarp
daiiatgrsdypnqvnnvlgfpsifrgaldtrstqineemklaavhalaklaredfkfgr
dylipkpfdtrvllwvapevakaamksgvatraiedwdqyreslealqgpskvfirsain
rvhqnsaanggelprivfpegtstkvlkalatlveekicqpillgypervkekikaldip
llndvsivhpsshpkyfsfveklyslrqrkginlgeaerlmadpnyfaammvnqgeadgm
vsgssinyadavrpilqtigvykegipaglnfvlledkflvladttvnlnptaeqcaqia
lqaakiveyfgieprvamlsysnfsgaegtprkmkkaaeiarslrpdlmiegdmqadtav
npeimerlfpfsglkgganvlvfpnlessniaykliqqigkaevigpfltgvrrsanvlq
rtttvdgivnsvvftaleaqyikevlks

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6zngC (C:)
mgsshhhhhhsmdnktetkiepktgttnfdqeallyhqqgkpgkievisskpcatekdls
layspgvaapckaiakdpakvydytakgnlvavisngtavlglgnigpaagkpvmegkgi
lfkqfagidvfdievaatdvdvfcnavrvleptfgginledikapecfeieerlkkemni
pvfhddqhgtaivsgaallnacsitnrkmetvrivvngagasanscakifialgarreni
imcdsqgviykgrtagmnkykeyfaseteartltealrgadvfvglsvagaltpemlkdm
akdpiifamanpepeitpdkaraarpdaiiatgrsdypnqvnnvlgfpsifrgaldtrst
qineemklaavhalaklaredvpdkvsatyggksfkfgrdylipkpfdtrvllwvapeva
kaamksgvatraiedwdqyreslealqgpskvfirsainrvhqnsaanggelprivfpeg
tstkvlkalatlveekicqpillgypervkekikaldipllndvsivhpsshpkyfsfve
klyslrqrkginlgeaerlmadpnyfaammvnqgeadgmvsgssinyadavrpilqtigv
ykegipaglnfvlledkflvladttvnlnptaeqcaqialqaakiveyfgieprvamlsy
snfsgaegtprkmkkaaeiarslrpdlmiegdmqadtavnpeimerlfpfsglkgganvl
vfpnlessniaykliqqigkaevigpfltgvrrsanvlqrtttvdgivnsvvftaleaqy
ikevlksrgkk

    Sequence, based on observed residues (ATOM records):
    >6zngC (C:)
ttnfdqeallyhqqgkpgkievisskpcatekdlslayspgvaapckaiakdpakvydyt
akgnlvavisngtavlglgnigpaagkpvmegkgilfkqfagidvfdievaatdvdvfcn
avrvleptfgginledikapecfeieerlkkemnipvfhddqhgtaivsgaallnacsit
nrkmetvrivvngagasanscakifialgarreniimcdsqgviykgrtagmnkykeyfa
seteartltealrgadvfvglsvagaltpemlkdmakdpiifamanpepeitpdkaraar
pdaiiatgrsdypnqvnnvlgfpsifrgaldtrstqineemklaavhalaklaredsfkf
grdylipkpfdtrvllwvapevakaamksgvatraiedwdqyreslealqgpskvfirsa
inrvhqnsaanggelprivfpegtstkvlkalatlveekicqpillgypervkekikald
ipllndvsivhpsshpkyfsfveklyslrqrkginlgeaerlmadpnyfaammvnqgead
gmvsgssinyadavrpilqtigvykegipaglnfvlledkflvladttvnlnptaeqcaq
ialqaakiveyfgieprvamlsysnfsgaegtprkmkkaaeiarslrpdlmiegdmqadt
avnpeimerlfpfsglkgganvlvfpnlessniaykliqqigkaevigpfltgvrrsanv
lqrtttvdgivnsvvftaleaqyikevlks

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6zngD (D:)
mgsshhhhhhsmdnktetkiepktgttnfdqeallyhqqgkpgkievisskpcatekdls
layspgvaapckaiakdpakvydytakgnlvavisngtavlglgnigpaagkpvmegkgi
lfkqfagidvfdievaatdvdvfcnavrvleptfgginledikapecfeieerlkkemni
pvfhddqhgtaivsgaallnacsitnrkmetvrivvngagasanscakifialgarreni
imcdsqgviykgrtagmnkykeyfaseteartltealrgadvfvglsvagaltpemlkdm
akdpiifamanpepeitpdkaraarpdaiiatgrsdypnqvnnvlgfpsifrgaldtrst
qineemklaavhalaklaredvpdkvsatyggksfkfgrdylipkpfdtrvllwvapeva
kaamksgvatraiedwdqyreslealqgpskvfirsainrvhqnsaanggelprivfpeg
tstkvlkalatlveekicqpillgypervkekikaldipllndvsivhpsshpkyfsfve
klyslrqrkginlgeaerlmadpnyfaammvnqgeadgmvsgssinyadavrpilqtigv
ykegipaglnfvlledkflvladttvnlnptaeqcaqialqaakiveyfgieprvamlsy
snfsgaegtprkmkkaaeiarslrpdlmiegdmqadtavnpeimerlfpfsglkgganvl
vfpnlessniaykliqqigkaevigpfltgvrrsanvlqrtttvdgivnsvvftaleaqy
ikevlksrgkk

    Sequence, based on observed residues (ATOM records):
    >6zngD (D:)
tnfdqeallyhqqgkpgkievisskpcatekdlslayspgvaapckaiakdpakvydyta
kgnlvavisngtavlglgnigpaagkpvmegkgilfkqfagidvfdievaatdvdvfcna
vrvleptfgginledikapecfeieerlkkemnipvfhddqhgtaivsgaallnacsitn
rkmetvrivvngagasanscakifialgarreniimcdsqgviykgrtagmnkykeyfas
eteartltealrgadvfvglsvagaltpemlkdmakdpiifamanpepeitpdkaraarp
daiiatgrsdypnqvnnvlgfpsifrgaldtrstqineemklaavhalaklaredsfkfg
rdylipkpfdtrvllwvapevakaamksgvatraiedwdqyreslealqgpskvfirsai
nrvhqnsaanggelprivfpegtstkvlkalatlveekicqpillgypervkekikaldi
pllndvsivhpsshpkyfsfveklyslrqrkginlgeaerlmadpnyfaammvnqgeadg
mvsgssinyadavrpilqtigvykegipaglnfvlledkflvladttvnlnptaeqcaqi
alqaakiveyfgieprvamlsysnfsgaegtprkmkkaaeiarslrpdlmiegdmqadta
vnpeimerlfpfsglkgganvlvfpnlessniaykliqqigkaevigpfltgvrrsanvl
qrtttvdgivnsvvftaleaqyikevlksr

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6zngE (E:)
mgsshhhhhhsmdnktetkiepktgttnfdqeallyhqqgkpgkievisskpcatekdls
layspgvaapckaiakdpakvydytakgnlvavisngtavlglgnigpaagkpvmegkgi
lfkqfagidvfdievaatdvdvfcnavrvleptfgginledikapecfeieerlkkemni
pvfhddqhgtaivsgaallnacsitnrkmetvrivvngagasanscakifialgarreni
imcdsqgviykgrtagmnkykeyfaseteartltealrgadvfvglsvagaltpemlkdm
akdpiifamanpepeitpdkaraarpdaiiatgrsdypnqvnnvlgfpsifrgaldtrst
qineemklaavhalaklaredvpdkvsatyggksfkfgrdylipkpfdtrvllwvapeva
kaamksgvatraiedwdqyreslealqgpskvfirsainrvhqnsaanggelprivfpeg
tstkvlkalatlveekicqpillgypervkekikaldipllndvsivhpsshpkyfsfve
klyslrqrkginlgeaerlmadpnyfaammvnqgeadgmvsgssinyadavrpilqtigv
ykegipaglnfvlledkflvladttvnlnptaeqcaqialqaakiveyfgieprvamlsy
snfsgaegtprkmkkaaeiarslrpdlmiegdmqadtavnpeimerlfpfsglkgganvl
vfpnlessniaykliqqigkaevigpfltgvrrsanvlqrtttvdgivnsvvftaleaqy
ikevlksrgkk

    Sequence, based on observed residues (ATOM records):
    >6zngE (E:)
tnfdqeallyhqqgkpgkievisskpcatekdlslayspgvaapckaiakdpakvydyta
kgnlvavisngtavlglgnigpaagkpvmegkgilfkqfagidvfdievaatdvdvfcna
vrvleptfgginledikapecfeieerlkkemnipvfhddqhgtaivsgaallnacsitn
rkmetvrivvngagasanscakifialgarreniimcdsqgviykgrtagmnkykeyfas
eteartltealrgadvfvglsvagaltpemlkdmakdpiifamanpepeitpdkaraarp
daiiatgrsdypnqvnnvlgfpsifrgaldtrstqineemklaavhalaklareggksfk
fgrdylipkpfdtrvllwvapevakaamksgvatraiedwdqyreslealqgpskvfirs
ainrvhqnsaanggelprivfpegtstkvlkalatlveekicqpillgypervkekikal
dipllndvsivhpsshpkyfsfveklyslrqrkginlgeaerlmadpnyfaammvnqgea
dgmvsgssinyadavrpilqtigvykegipaglnfvlledkflvladttvnlnptaeqca
qialqaakiveyfgieprvamlsysnfsgaegtprkmkkaaeiarslrpdlmiegdmqad
tavnpeimerlfpfsglkgganvlvfpnlessniaykliqqigkaevigpfltgvrrsan
vlqrtttvdgivnsvvftaleaqyikevlks

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6zngF (F:)
mgsshhhhhhsmdnktetkiepktgttnfdqeallyhqqgkpgkievisskpcatekdls
layspgvaapckaiakdpakvydytakgnlvavisngtavlglgnigpaagkpvmegkgi
lfkqfagidvfdievaatdvdvfcnavrvleptfgginledikapecfeieerlkkemni
pvfhddqhgtaivsgaallnacsitnrkmetvrivvngagasanscakifialgarreni
imcdsqgviykgrtagmnkykeyfaseteartltealrgadvfvglsvagaltpemlkdm
akdpiifamanpepeitpdkaraarpdaiiatgrsdypnqvnnvlgfpsifrgaldtrst
qineemklaavhalaklaredvpdkvsatyggksfkfgrdylipkpfdtrvllwvapeva
kaamksgvatraiedwdqyreslealqgpskvfirsainrvhqnsaanggelprivfpeg
tstkvlkalatlveekicqpillgypervkekikaldipllndvsivhpsshpkyfsfve
klyslrqrkginlgeaerlmadpnyfaammvnqgeadgmvsgssinyadavrpilqtigv
ykegipaglnfvlledkflvladttvnlnptaeqcaqialqaakiveyfgieprvamlsy
snfsgaegtprkmkkaaeiarslrpdlmiegdmqadtavnpeimerlfpfsglkgganvl
vfpnlessniaykliqqigkaevigpfltgvrrsanvlqrtttvdgivnsvvftaleaqy
ikevlksrgkk

    Sequence, based on observed residues (ATOM records):
    >6zngF (F:)
ttnfdqeallyhqqgkpgkievisskpcatekdlslayspgvaapckaiakdpakvydyt
akgnlvavisngtavlglgnigpaagkpvmegkgilfkqfagidvfdievaatdvdvfcn
avrvleptfgginledikapecfeieerlkkemnipvfhddqhgtaivsgaallnacsit
nrkmetvrivvngagasanscakifialgarreniimcdsqgviykgrtagmnkykeyfa
seteartltealrgadvfvglsvagaltpemlkdmakdpiifamanpepeitpdkaraar
pdaiiatgrsdypnqvnnvlgfpsifrgaldtrstqineemklaavhalaklareggksf
kfgrdylipkpfdtrvllwvapevakaamksgvatraiedwdqyreslealqgpskvfir
sainrvhqnsaanggelprivfpegtstkvlkalatlveekicqpillgypervkekika
ldipllndvsivhpsshpkyfsfveklyslrqrkginlgeaerlmadpnyfaammvnqge
adgmvsgssinyadavrpilqtigvykegipaglnfvlledkflvladttvnlnptaeqc
aqialqaakiveyfgieprvamlsysnfsgaegtprkmkkaaeiarslrpdlmiegdmqa
dtavnpeimerlfpfsglkgganvlvfpnlessniaykliqqigkaevigpfltgvrrsa
nvlqrtttvdgivnsvvftaleaqyikevlksr