PDB entry 6zn8

View 6zn8 on RCSB PDB site
Description: crystal structure of the h. influenzae vapxd toxin-antitoxin complex
Deposited on 2020-07-06, released 2020-11-04
The last revision was dated 2021-02-17, with a file datestamp of 2021-02-12.
Experiment type: XRAY
Resolution: 3.21 Å
R-factor: N/A
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Endoribonuclease VapD
    Species: Haemophilus influenzae (strain 86-028NP) [TaxId:281310]
    Gene: vapD, NTHI0577
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q4QN95 (1-End)
      • initiating methionine (0)
  • Chain 'B':
    Compound: Endoribonuclease VapD
    Species: Haemophilus influenzae (strain 86-028NP) [TaxId:281310]
    Gene: vapD, NTHI0577
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q4QN95 (1-End)
      • initiating methionine (0)
  • Chain 'C':
    Compound: VapX
    Species: Haemophilus influenzae (strain 86-028NP) [TaxId:281310]
    Gene: vapX, NTHI0578
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q4QN94 (19-80)
      • expression tag (15-18)
  • Chain 'D':
    Compound: Endoribonuclease VapD
    Species: Haemophilus influenzae (strain 86-028NP) [TaxId:281310]
    Gene: vapD, NTHI0577
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q4QN95 (1-End)
      • initiating methionine (0)
  • Chain 'E':
    Compound: Endoribonuclease VapD
    Species: Haemophilus influenzae (strain 86-028NP) [TaxId:281310]
    Gene: vapD, NTHI0577
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q4QN95 (1-End)
      • initiating methionine (0)
  • Chain 'F':
    Compound: VapX
    Species: Haemophilus influenzae (strain 86-028NP) [TaxId:281310]
    Gene: vapX, NTHI0578
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6zn8A (A:)
myaiafdlvvkdtqdyhpkgvqeaytdigavlakfgfvrtqgslytnmnedmanlfqamn
alkqlawisqsvrdirafrieqwsdftdfirnlehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6zn8A (A:)
myaiafdlvvkdtqdyhpkgvqeaytdigavlakfgfvrtqgslytnmnedmanlfqamn
alkqlawisqsvrdirafrieqwsdftdfi

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6zn8B (B:)
myaiafdlvvkdtqdyhpkgvqeaytdigavlakfgfvrtqgslytnmnedmanlfqamn
alkqlawisqsvrdirafrieqwsdftdfirnlehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6zn8B (B:)
myaiafdlvvkdtqdyhpkgvqeaytdigavlakfgfvrtqgslytnmnedmanlfqamn
alkqlawisqsvrdirafrieqwsdftdfir

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6zn8C (C:)
masmtggqqmgrdpnsssmelrqqiptgcikqfgqfgvpyvvgevaeflpdgdvlvnitl
lqsgekdiyrlsylledpeae

    Sequence, based on observed residues (ATOM records):
    >6zn8C (C:)
sssmelrqqiptgcikqfgqfgvpyvvgevaeflpdgdvlvnitllqsgekdiyrlsyll
edpeae

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6zn8D (D:)
myaiafdlvvkdtqdyhpkgvqeaytdigavlakfgfvrtqgslytnmnedmanlfqamn
alkqlawisqsvrdirafrieqwsdftdfirnlehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6zn8D (D:)
myaiafdlvvkdtqdyhpkgvqeaytdigavlakfgfvrtqgslytnmnedmanlfqamn
alkqlawisqsvrdirafrieqwsdftdfi

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6zn8E (E:)
myaiafdlvvkdtqdyhpkgvqeaytdigavlakfgfvrtqgslytnmnedmanlfqamn
alkqlawisqsvrdirafrieqwsdftdfirnlehhhhhh

    Sequence, based on observed residues (ATOM records):
    >6zn8E (E:)
myaiafdlvvkdtqdyhpkgvqeaytdigavlakfgfvrtqgslytnmnedmanlfqamn
alkqlawisqsvrdirafrieqwsdftdfi

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6zn8F (F:)
masmtggqqmgrdpnsssmelrqqiptgcikqfgqfgvpyvvgevaeflpdgdvlvnitl
lqsgekdiyrlsylledpeae

    Sequence, based on observed residues (ATOM records):
    >6zn8F (F:)
elrqqiptgcikqfgqfgvpyvvgevaeflpdgdvlvnitllqsgekdiyrlsylledpe
ae