PDB entry 6zml

View 6zml on RCSB PDB site
Description: cryoem structure of merkel cell polyomavirus virus-like particle
Deposited on 2020-07-03, released 2020-08-05
The last revision was dated 2020-10-07, with a file datestamp of 2020-10-02.
Experiment type: EM
Resolution: 3.4 Å
R-factor: N/A
AEROSPACI score: 0.16 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Capsid protein VP1
    Species: Merkel cell polyomavirus [TaxId:493803]
    Gene: VP1
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Capsid protein VP1
    Species: Merkel cell polyomavirus [TaxId:493803]
    Gene: VP1
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Capsid protein VP1
    Species: Merkel cell polyomavirus [TaxId:493803]
    Gene: VP1
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Capsid protein VP1
    Species: Merkel cell polyomavirus [TaxId:493803]
    Gene: VP1
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Capsid protein VP1
    Species: Merkel cell polyomavirus [TaxId:493803]
    Gene: VP1
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Capsid protein VP1
    Species: Merkel cell polyomavirus [TaxId:493803]
    Gene: VP1
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6zmlA (A:)
mapkrkasstcktpkrqcipkpgccpnvasvpkllvkggvevlsvvtgedsitqielyln
prmgvnspdlpttsnwytytydlqpkgsspdqpikenlpaysvarvslpmlneditcdtl
qmweaisvktevvgisslinvhywdmkrvhdygagipvsgvnyhmfaiggepldlqglvl
dyqtqypkttnggpitietvlgrkmtpknqgldpqakakldkdgnypievwcpdpsknen
sryygsiqtgsqtptvlqfsntlttvlldengvgplckgdglfiscadivgflfktsgkm
alhglpryfnvtlrkrwvknpypvvnlinslfsnlmpkvsgqpmegkdnqveevriyegs
eqlpgdpdivrfldkfgqektvypkpsvapaavtfqsnqqdkgkaplkgpqkasqkesqt
qel

    Sequence, based on observed residues (ATOM records):
    >6zmlA (A:)
pkpgccpnvasvpkllvkggvevlsvvtgedsitqielylnprmgvnspdlpttsnwyty
tydlqpkgsspdqpikenlpaysvarvslpmlneditcdtlqmweaisvktevvgissli
nvhywdmkrvhdygagipvsgvnyhmfaiggepldlqglvldyqtqypkttnggpitiet
vlgrkmtpknqgldpqakakldkdgnypievwcpdpsknensryygsiqtgsqtptvlqf
sntlttvlldengvgplckgdglfiscadivgflfktsgkmalhglpryfnvtlrkrwvk
npypvvnlinslfsnlmpkvsgqpmegkdnqveevriyegseqlpgdpdivrfldkfgq

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6zmlB (B:)
mapkrkasstcktpkrqcipkpgccpnvasvpkllvkggvevlsvvtgedsitqielyln
prmgvnspdlpttsnwytytydlqpkgsspdqpikenlpaysvarvslpmlneditcdtl
qmweaisvktevvgisslinvhywdmkrvhdygagipvsgvnyhmfaiggepldlqglvl
dyqtqypkttnggpitietvlgrkmtpknqgldpqakakldkdgnypievwcpdpsknen
sryygsiqtgsqtptvlqfsntlttvlldengvgplckgdglfiscadivgflfktsgkm
alhglpryfnvtlrkrwvknpypvvnlinslfsnlmpkvsgqpmegkdnqveevriyegs
eqlpgdpdivrfldkfgqektvypkpsvapaavtfqsnqqdkgkaplkgpqkasqkesqt
qel

    Sequence, based on observed residues (ATOM records):
    >6zmlB (B:)
pkpgccpnvasvpkllvkggvevlsvvtgedsitqielylnprmgvnspdlpttsnwyty
tydlqpkgsspdqpikenlpaysvarvslpmlneditcdtlqmweaisvktevvgissli
nvhywdmkrvhdygagipvsgvnyhmfaiggepldlqglvldyqtqypkttnggpitiet
vlgrkmtpknqgldpqakakldkdgnypievwcpdpsknensryygsiqtgsqtptvlqf
sntlttvlldengvgplckgdglfiscadivgflfktsgkmalhglpryfnvtlrkrwvk
npypvvnlinslfsnlmpkvsgqpmegkdnqveevriyegseqlpgdpdivrfldkfgqe
ktvypkps

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6zmlC (C:)
mapkrkasstcktpkrqcipkpgccpnvasvpkllvkggvevlsvvtgedsitqielyln
prmgvnspdlpttsnwytytydlqpkgsspdqpikenlpaysvarvslpmlneditcdtl
qmweaisvktevvgisslinvhywdmkrvhdygagipvsgvnyhmfaiggepldlqglvl
dyqtqypkttnggpitietvlgrkmtpknqgldpqakakldkdgnypievwcpdpsknen
sryygsiqtgsqtptvlqfsntlttvlldengvgplckgdglfiscadivgflfktsgkm
alhglpryfnvtlrkrwvknpypvvnlinslfsnlmpkvsgqpmegkdnqveevriyegs
eqlpgdpdivrfldkfgqektvypkpsvapaavtfqsnqqdkgkaplkgpqkasqkesqt
qel

    Sequence, based on observed residues (ATOM records):
    >6zmlC (C:)
ipkpgccpnvasvpkllvkggvevlsvvtgedsitqielylnprmgvnspdlpttsnwyt
ytydlqpkgsspdqpikenlpaysvarvslpmlneditcdtlqmweaisvktevvgissl
invhywdmkrvhdygagipvsgvnyhmfaiggepldlqglvldyqtqypkttnggpitie
tvlgrkmtpknqgldpqakakldkdgnypievwcpdpsknensryygsiqtgsqtptvlq
fsntlttvlldengvgplckgdglfiscadivgflfktsgkmalhglpryfnvtlrkrwv
knpypvvnlinslfsnlmpkvsgqpmegkdnqveevriyegseqlpgdpdivrfldkfgq
ek

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6zmlD (D:)
mapkrkasstcktpkrqcipkpgccpnvasvpkllvkggvevlsvvtgedsitqielyln
prmgvnspdlpttsnwytytydlqpkgsspdqpikenlpaysvarvslpmlneditcdtl
qmweaisvktevvgisslinvhywdmkrvhdygagipvsgvnyhmfaiggepldlqglvl
dyqtqypkttnggpitietvlgrkmtpknqgldpqakakldkdgnypievwcpdpsknen
sryygsiqtgsqtptvlqfsntlttvlldengvgplckgdglfiscadivgflfktsgkm
alhglpryfnvtlrkrwvknpypvvnlinslfsnlmpkvsgqpmegkdnqveevriyegs
eqlpgdpdivrfldkfgqektvypkpsvapaavtfqsnqqdkgkaplkgpqkasqkesqt
qel

    Sequence, based on observed residues (ATOM records):
    >6zmlD (D:)
ipkpgccpnvasvpkllvkggvevlsvvtgedsitqielylnprmgvnspdlpttsnwyt
ytydlqpkgsspdqpikenlpaysvarvslpmlneditcdtlqmweaisvktevvgissl
invhywdmkrvhdygagipvsgvnyhmfaiggepldlqglvldyqtqypkttnggpitie
tvlgrkmtpknqgldpqakakldkdgnypievwcpdpsknensryygsiqtgsqtptvlq
fsntlttvlldengvgplckgdglfiscadivgflfktsgkmalhglpryfnvtlrkrwv
knpypvvnlinslfsnlmpkvsgqpmegkdnqveevriyegseqlpgdpdi

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6zmlE (E:)
mapkrkasstcktpkrqcipkpgccpnvasvpkllvkggvevlsvvtgedsitqielyln
prmgvnspdlpttsnwytytydlqpkgsspdqpikenlpaysvarvslpmlneditcdtl
qmweaisvktevvgisslinvhywdmkrvhdygagipvsgvnyhmfaiggepldlqglvl
dyqtqypkttnggpitietvlgrkmtpknqgldpqakakldkdgnypievwcpdpsknen
sryygsiqtgsqtptvlqfsntlttvlldengvgplckgdglfiscadivgflfktsgkm
alhglpryfnvtlrkrwvknpypvvnlinslfsnlmpkvsgqpmegkdnqveevriyegs
eqlpgdpdivrfldkfgqektvypkpsvapaavtfqsnqqdkgkaplkgpqkasqkesqt
qel

    Sequence, based on observed residues (ATOM records):
    >6zmlE (E:)
pnvasvpkllvkggvevlsvvtgedsitqielylnprmgvnspdlpttsnwytytydlqp
kgsspdqpikenlpaysvarvslpmlneditcdtlqmweaisvktevvgisslinvhywd
mkrvhdygagipvsgvnyhmfaiggepldlqglvldyqtqypkttnggpitietvlgrkm
tpknqgldpqakakldkdgnypievwcpdpsknensryygsiqtgsqtptvlqfsntltt
vlldengvgplckgdglfiscadivgflfktsgkmalhglpryfnvtlrkrwvknpypvv
nlinslfsnlmpkvsgqpmegkdnqveevriyegseqlpgdpdivrfldkfgqektvypk
p

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6zmlF (F:)
mapkrkasstcktpkrqcipkpgccpnvasvpkllvkggvevlsvvtgedsitqielyln
prmgvnspdlpttsnwytytydlqpkgsspdqpikenlpaysvarvslpmlneditcdtl
qmweaisvktevvgisslinvhywdmkrvhdygagipvsgvnyhmfaiggepldlqglvl
dyqtqypkttnggpitietvlgrkmtpknqgldpqakakldkdgnypievwcpdpsknen
sryygsiqtgsqtptvlqfsntlttvlldengvgplckgdglfiscadivgflfktsgkm
alhglpryfnvtlrkrwvknpypvvnlinslfsnlmpkvsgqpmegkdnqveevriyegs
eqlpgdpdivrfldkfgqektvypkpsvapaavtfqsnqqdkgkaplkgpqkasqkesqt
qel

    Sequence, based on observed residues (ATOM records):
    >6zmlF (F:)
kpgccpnvasvpkllvkggvevlsvvtgedsitqielylnprmgvnspdlpttsnwytyt
ydlqpkgsspdqpikenlpaysvarvslpmlneditcdtlqmweaisvktevvgisslin
vhywdmkrvhdygagipvsgvnyhmfaiggepldlqglvldyqtqypkttnggpitietv
lgrkmtpknqgldpqakakldkdgnypievwcpdpsknensryygsiqtgsqtptvlqfs
ntlttvlldengvgplckgdglfiscadivgflfktsgkmalhglpryfnvtlrkrwvkn
pypvmpkvsgqpmegkdnqveevriyegseqlpgdpdivrfldkfgqektvypkpsv