PDB entry 6zk9

View 6zk9 on RCSB PDB site
Description: Peripheral domain of open complex I during turnover
Class: electron transport
Keywords: complex, respiration, NADH, proton pump, mitochondria, iron-sulphur cluster, oxidoreductase, membrane protein, ELECTRON TRANSPORT
Deposited on 2020-06-30, released 2020-10-07
The last revision prior to the SCOPe 2.07 freeze date was dated 2020-10-14, with a file datestamp of 2020-10-09.
Experiment type: EM
Resolution: 2.3 Å
R-factor: N/A
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain '1':
    Compound: nadh dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial
    Species: Ovis aries [TaxId:9940]
    Database cross-references and differences (RAF-indexed):
  • Chain '2':
    Compound: Mitochondrial complex I, 24 kDa subunit
    Species: Ovis aries [TaxId:9940]
    Database cross-references and differences (RAF-indexed):
  • Chain '3':
    Compound: NADH:ubiquinone oxidoreductase core subunit S1
    Species: Ovis aries [TaxId:9940]
    Database cross-references and differences (RAF-indexed):
  • Chain '4':
    Compound: Mitochondrial complex I, 49 kDa subunit
    Species: Ovis aries [TaxId:9940]
    Database cross-references and differences (RAF-indexed):
    • PDB 6ZK9 (Start-462)
    Domains in SCOPe 2.07: d6zk94_
  • Chain '5':
    Compound: NADH:ubiquinone oxidoreductase core subunit S3
    Species: Ovis aries [TaxId:9940]
    Database cross-references and differences (RAF-indexed):
  • Chain '6':
    Compound: Mitochondrial complex I, PSST subunit
    Species: Ovis aries [TaxId:9940]
    Database cross-references and differences (RAF-indexed):
    • PDB 6ZK9 (Start-222)
  • Chain '9':
    Compound: Mitochondrial complex I, TYKY subunit
    Species: Ovis aries [TaxId:9940]
    Database cross-references and differences (RAF-indexed):
    • PDB 6ZK9 (Start-216)
  • Chain 'a':
    Compound: Mitochondrial complex I, 10 kDa subunit
    Species: Ovis aries [TaxId:9940]
    Database cross-references and differences (RAF-indexed):
    • PDB 6ZK9 (Start-108)
  • Chain 'b':
    Compound: Mitochondrial complex I, 13 kDa subunit
    Species: Ovis aries [TaxId:9940]
    Database cross-references and differences (RAF-indexed):
    • PDB 6ZK9
  • Chain 'c':
    Compound: NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial
    Species: Ovis aries [TaxId:9940]
    Database cross-references and differences (RAF-indexed):
  • Chain 'd':
    Compound: NADH:ubiquinone oxidoreductase subunit A9
    Species: Ovis aries [TaxId:9940]
    Database cross-references and differences (RAF-indexed):
  • Chain 'e':
    Compound: nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 2
    Species: Ovis aries [TaxId:9940]
    Database cross-references and differences (RAF-indexed):
  • Chain 'f':
    Compound: Mitochondrial complex I, B13 subunit
    Species: Ovis aries [TaxId:9940]
    Database cross-references and differences (RAF-indexed):
  • Chain 'g':
    Compound: NADH:ubiquinone oxidoreductase subunit A6
    Species: Ovis aries [TaxId:9940]
    Database cross-references and differences (RAF-indexed):
  • Chain 'h':
    Compound: Mitochondrial complex I, B14.5a subunit
    Species: Ovis aries [TaxId:9940]
    Database cross-references and differences (RAF-indexed):
  • Chain 'i':
    Compound: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12
    Species: Ovis aries [TaxId:9940]
    Database cross-references and differences (RAF-indexed):
  • Chain 'j':
    Compound: Acyl carrier protein
    Species: Ovis aries [TaxId:9940]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6zk9j_
  • Chain 'q':
    Compound: Mitochondrial complex I, B16.6 subunit
    Species: Ovis aries [TaxId:9940]
    Database cross-references and differences (RAF-indexed):
    • PDB 6ZK9
  • Heterogens: SF4, FMN, NAI, FES, K, PC1, 3PE, ZN, NDP, ZMP, CDL, HOH

PDB Chain Sequences:

  • Chain '1':
    No sequence available.

  • Chain '2':
    No sequence available.

  • Chain '3':
    No sequence available.

  • Chain '4':
    Sequence, based on SEQRES records: (download) 
    >6zk94 (4:)
maalralrrlrgaaaqvlrpgagarlpiqpsrgarqwqpdvewaeqyggavmyptketah
wkpppwndvdppkdtlvsnltlnfgpqhpaahgvlrlvmelsgemvrkcdphigllhrgt
eklieyktylqalpyfdrldyvsmmcneqayslavekllniqpppraqwirvlfgeitrl
lnhimavtthaldigamtpffwmfeerekmfefyervsgarmhaayvrpggvhqdlplgl
mddiyefsknfslrideleemltnnriwrnrtvdigvvtaedalnygfsgvmlrgsgiqw
dlrktqpydvydqvefdvpigsrgdcydrylcrveemrqsiriisqclnkmppgeikvdd
akvsppkraemktsmeslihhfklytegyqvppgatytaieapkgefgvylvsdgssrpy
rckikapgfahlagldkmskghmladvvaiigtqdivfgevdr

    Sequence, based on observed residues (ATOM records): (download) 
    >6zk94 (4:)
snltlnfgpgvlrlvmelsgemvrkcdphigllhrgteklieyktylqalpyfdrldyvs
mmcneqayslavekllniqpppraqwirvlfgeitrllnhimavtthaldigamtpffwm
feerekmfefyervsgarmhaayvrpggvhqdlplglmddiyefsknfslrideleemlt
nnriwrnrtvdigvvtaedalnygfsgvmlrgsgiqwdlrktqpydvydqvefdvpigsr
gdcydrylcrveemrqsiriisqclnkmppgeikvddakvsppkraemktsmeslihhfk
lytegyqvppgatytaieapkgefgvylvsdgssrpyrckikapgfahlagldkmskghm
ladvvaiigtqdivfgevdr

  • Chain '5':
    No sequence available.

  • Chain '6':
    No sequence available.

  • Chain '9':
    No sequence available.

  • Chain 'a':
    No sequence available.

  • Chain 'b':
    No sequence available.

  • Chain 'c':
    No sequence available.

  • Chain 'd':
    No sequence available.

  • Chain 'e':
    No sequence available.

  • Chain 'f':
    No sequence available.

  • Chain 'g':
    No sequence available.

  • Chain 'h':
    No sequence available.

  • Chain 'i':
    No sequence available.

  • Chain 'j':
    Sequence, based on SEQRES records: (download) 
    >6zk9j (j:)
vevkdfyttnyqtavsfsplgpmpsmalmavslsganvpksggrpeesrvpvltqrkvpg
rvtplcrqysdappltlegikdrvlyvlklydkidpeklsvnshfmkdlgldsldqveii
mamedefgfeipdidaeklmcpqeivdyiadkkdvye

    Sequence, based on observed residues (ATOM records): (download) 
    >6zk9j (j:)
pltlegikdrvlyvlklydkidpeklsvnshfmkdlgldsldqveiimamedefgfeipd
idaeklmcpqeivdyiadkkdv

  • Chain 'q':
    No sequence available.