PDB entry 6zjy

View 6zjy on RCSB PDB site
Description: respiratory complex i from thermus thermophilus, nad+ dataset, minor state
Deposited on 2020-06-29, released 2020-09-02
The last revision was dated 2020-09-02, with a file datestamp of 2020-08-28.
Experiment type: EM
Resolution: 5.5 Å
R-factor: N/A
AEROSPACI score: 0.02 (click here for full SPACI score report)

Chains and heterogens:

  • Chain '1':
    Compound: NADH-quinone oxidoreductase subunit 1
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed):
  • Chain '2':
    Compound: NADH-quinone oxidoreductase subunit 2
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed):
  • Chain '3':
    Compound: NADH-quinone oxidoreductase subunit 3
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed):
  • Chain '4':
    Compound: NADH-quinone oxidoreductase subunit 4
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed):
  • Chain '5':
    Compound: NADH-quinone oxidoreductase subunit 5
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed):
  • Chain '6':
    Compound: NADH-quinone oxidoreductase subunit 6
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed):
  • Chain '7':
    Compound: NADH-quinone oxidoreductase subunit 15
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed):
  • Chain '9':
    Compound: NADH-quinone oxidoreductase subunit 9
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed):
  • Chain 'A':
    Compound: NADH-quinone oxidoreductase subunit 7
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: NADH-quinone oxidoreductase subunit 8
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: NADH-quinone oxidoreductase subunit 10
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed):
  • Chain 'K':
    Compound: NADH-quinone oxidoreductase subunit 11
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed):
  • Chain 'L':
    Compound: NADH-quinone oxidoreductase subunit 12
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed):
  • Chain 'M':
    Compound: NADH-quinone oxidoreductase subunit 13
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed):
  • Chain 'N':
    Compound: NADH-quinone oxidoreductase subunit 14
    Species: Thermus thermophilus [TaxId:274]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: SF4, FES

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain '1':
    Sequence, based on SEQRES records:
    >6zjy1 (1:)
mtgpilsgldprfertlyahvgkegswtldyylrhggyetakrvlkektpdevieevkrs
glrgrggagfptglkwsfmpkddgkqhylicnadesepgsfkdryiledvphlliegmil
agyairatvgyiyvrgeyrraadrleqaikearargylgknlfgtdfsfdlhvhrgagay
icgeetalmnsleglranprlkppfpaqsglwgkpttinnvetlasvvpimergadwfaq
mgteqskgmklyqisgpvkrpgvyelpmgttfreliyewaggplepiqaiipggsstppl
pfteevldtpmsyehlqakgsmlgtggvilipervsmvdamwnltrfyahescgkctpcr
egvagfmvnlfakigtgqgeekdvenleallpliegrsfcpladaavwpvkgslrhfkdq
ylalarekrpvprpslwr

    Sequence, based on observed residues (ATOM records):
    >6zjy1 (1:)
tgpilsgldprfertlyahvgkegswtldyylrhggyetakrvlkektpdevieevkrsg
lrgrggagfptglkwsfmpkddgkqhylicnadesepgsfkdryiledvphlliegmila
gyairatvgyiyvrgeyrraadrleqaikearargylgknlfgtdfsfdlhvhrgagayi
cgeetalmnsleglranprlkppfpaqsglwgkpttinnvetlasvvpimergadwfaqm
gteqskgmklyqisgpvkrpgvyelpmgttfreliyewaggplepiqaiipggsstpplp
fteevldtpmsyehlqakgsmlgtggvilipervsmvdamwnltrfyahescgkctpcre
gvagfmvnlfakigtgqgeekdvenleallpliegrsfcpladaavwpvkgslrhfkdqy
lalarekrpvprpslwr

  • Chain '2':
    Sequence, based on SEQRES records:
    >6zjy2 (2:)
mgffddkqdfleetfakyppegrraaimpllrrvqqeegwirperieeiarlvgttptev
mgvasfysyyqfvptgkyhlqvcatlscklagaeelwdyltetlgigpgevtpdglfsvq
kveclgschtapviqvndepyvecvtrarleallaglragkrleeielpgkcghhvheve
v

    Sequence, based on observed residues (ATOM records):
    >6zjy2 (2:)
ffddkqdfleetfakyppegrraaimpllrrvqqeegwirperieeiarlvgttptevmg
vasfysyyqfvptgkyhlqvcatlscklagaeelwdyltetlgigpgevtpdglfsvqkv
eclgschtapviqvndepyvecvtrarleallaglragkrleeielpgkcghhvheve

  • Chain '3':
    Sequence, based on SEQRES records:
    >6zjy3 (3:)
mvrvkvndrivevppgtsvmdavfhagydvplfcsekhlspigacrmclvriglpkkgpd
gkpllnekgepeiqwqpklaascvtavadgmvvdtlsdvvreaqagmveftllnhpldcp
tcdkggacelqdrtveyglyekyyqkgplelpvytrfeftrrhvdkhhplspfvildrer
cihckrcvryfeevpgdevldfiergvhtfigtmdfglpsgfsgnitdicpvgalldlta
rfrarnwemeetpttcalcpvgcgitadtrsgellrirarevpevneiwicdagrfghew
adqnrlktplvrkegrlveatweeaflalkeglkeargeevglylahdatleegllasel
akalktphldfqgrtaapaslfppasledllqadfalvlgdpteeapilhlrlsefvrdl
kpphrynhgtpfadlqikermprrtdkmalfapyraplmkwaaihevhrpgeereillal
lgdkegsemvakakeawekaknpvlilgagvlqdtvaaerarllaerkgakvlamtpaan
argleamgvlpgakgaswdepgalyayygfvppeealkgkrfvvmhlshlhplaeryahv
vlpaptfyekrghlvnlegrvlplspapiengeaegalqvlallaealgvrppfrlhlea
qkalkarkvpeamgrlsfrlkelrpkerkgafylrptmwkahqavgkaqeaaraelwahp
etaraealpegaqvavetpfgrvearvvhredvpkghlylsalgpaaglrvegrvlvpag
gea

    Sequence, based on observed residues (ATOM records):
    >6zjy3 (3:)
mvrvkvndrivevppgtsvmdavfhagydvplfcsekhlspigacrmclvrigliqwqpk
laascvtavadgmvvdtlsdvvreaqagmveftllnhpldcptcdkggacelqdrtveyg
lyekplelpvytrfeftrrhvdkhhplspfvildrercihckrcvryfeevpgdevldfi
ergvhtfigtmdfglpsgfsgnitdicpvgalldltarfrarnwemeetpttcalcpvgc
gitadtrsgellrirarevpevneiwicdagrfghewadqnrlktplvrkegrlveatwe
eaflalkeglkeargeevglylahdatleegllaselakalktphldfqgrtaapaslfp
pasledllqadfalvlgdpteeapilhlrlsefvrdlkpphrynhgtpfadlqikermpr
rtdkmalfapyraplmkwaaihevhrpgeereillallgdkegsemvakakeawekaknp
vlilgagvlqdtvaaerarllaerkgakvlamtpaanargleamgvlpgakgaswdepga
lyayygfvppeealkgkrfvvmhlshlhplaeryahvvlpaptfyekrghlvnlegrvlp
lspapiengeaegalqvlallaealgvrppfrlhleaqkalkarkvpeamgrlsfrlkel
rpkerkgafylrptmwkahqavgkaqeaaraelwahpetaraealpegaqvavetpfgrv
earvvhredvpkghlylsalgpaaglrvegrvlv

  • Chain '4':
    Sequence, based on SEQRES records:
    >6zjy4 (4:)
mreefleeipldappeeakelrtevmtlnvgpqhpsthgvlrlmvtlsgeevlevvphig
ylhtgfektmehrtylqnitytprmdylhsfahdlayalavekllgavvppraetirvil
nelsrlashlvflgtglldlgaltpffyafreretildlfewvtgqrfhhnyiriggvke
dlpeefvpelkkllevlphrideyealfaespifyerargvgvippevaidlgltggslr
asgvnydvrkaypysgyetytfdvplgergdvfdrmlvriremresvkiikqalerlepg
pvrdpnpqitppprhlletsmeaviyhfkhytegfhppkgevyvptesargelgyyivsd
ggsmpyrvkvrapsfvnlqslpyackgeqvpdmvaiiasldpvmgdvdr

    Sequence, based on observed residues (ATOM records):
    >6zjy4 (4:)
mtlnvgpqhpsthgvlrlmvtlsgeevlevvphigylhtgfektmehrtylqnitytprm
dylhsfahdlayalavekllgavvppraetirvilnelsrlashlvflgtglldlgaltp
ffyafreretildlfewvtgqrfhhnyiriggvkedlpeefvpelkkllevlphrideye
alfaespifyerargvgvippevaidlgltggslrasgvnydvrkaypysgyetytfdvp
lgergdvfdrmlvriremresvkiikqalerlepgpvrdpnpqitppprhlletsmeavi
yhfkhytegfhppkgevyvptesargelgyyivsdggsmpyrvkvrapsfvnlqslpyac
kgeqvpdmvaiiasldpvmgdvdr

  • Chain '5':
    Sequence, based on SEQRES records:
    >6zjy5 (5:)
mrlervleearakgypiednglgnlwvvlprerfkeemahykamgfnfladivgldylty
pdprperfavvyelvslpgwkdgdgsrffvrvyvpeedprlptvtdlwgsanflerevyd
lfgivfeghpdlrkiltpedleghplrkdyplgetptlfregryiipaefraaltgkdpg
ltfykggsrkgyrslwadlkkarevkg

    Sequence, based on observed residues (ATOM records):
    >6zjy5 (5:)
mrlervleearakgypiednglgnlwvvlprerfkeemahykamgfnfladivgldylty
pdprperfavvyelvslpgwkdgdgsrffvrvyvpeedprlptvtdlwgsanflerevyd
lfgivfeghpdlrkiltpedleghplrkdyplgetptlfregryiipaefraaltgkdpg
ltfykggsrkgyrslw

  • Chain '6':
    Sequence, based on SEQRES records:
    >6zjy6 (6:)
malkdlferdvqeleregilfttleklvawgrsnslwpatfglaccaiemmastdarndl
arfgsevfrasprqadvmivagrlskkmapvmrrvweqmpdpkwvismgacassggmfnn
yaivqnvdsvvpvdvyvpgcpprpealiyavmqlqkkvrgqaynergerlppvaawkrtr
g

    Sequence, based on observed residues (ATOM records):
    >6zjy6 (6:)
regilfttleklvawgrsnslwpatfglaccaiemmastdarndlarfgsevfrasprqa
dvmivagrlskkmapvmrrvweqmpdpkwvismgacassggmfnnyaivqnvdsvvpvdv
yvpgcpprpealiyavmqlqkkvrgqaynergerlppvaawkrtrg

  • Chain '7':
    Sequence, based on SEQRES records:
    >6zjy7 (7:)
msasserelyeawvellswmreyaqakgvrfekeadfpdfiyrmerpydlpttimtasls
dglgepflladvsprhaklkriglrlprahihlhahyepgkglvtgkipltkerffalad
rarealafa

    Sequence, based on observed residues (ATOM records):
    >6zjy7 (7:)
asserelyeawvellswmreyaqakgvrfekeadfpdfiyrmerpydlpttimtaslsdg
lgepflladvsprhaklkriglrlprahihlhahyepgkglvtgkipltkerffaladra
realafa

  • Chain '9':
    Sequence, based on SEQRES records:
    >6zjy9 (9:)
mtlkalaqslgitlkylfskpvtvpypdapvalkprfhgrhvltrhpnglekcigcslca
aacpayaiyvepaendpenpvsageryakvyeinmlrcifcglceeacptgaivlgydfe
madyeysdlvygkedmlvdvvgtkpqrreakrtgkpvkvgyvvpyvrpelegfkaptegg
kr

    Sequence, based on observed residues (ATOM records):
    >6zjy9 (9:)
tlkalaqslgitlkylfskpvtvpypdapvalkprfhgrhvltrhpnglekcigcslcaa
acpayaiyvepaendpenpvsageryakvyeinmlrcifcglceeacptgaivlgydfem
adyeysdlvygkedmlvdvvgtkpqrreakrtgkpvkvgyvvpyvrpelegfkapteggk

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6zjyA (A:)
mapiqeyvgtliyvgvalfigvaallvgallgpkkpgraklmpyesgndpagevkrfpvh
fyvvamlfilfdvevaflwpyavsagglglygflgvlaftlllfvgflyewwkgvmrwh

    Sequence, based on observed residues (ATOM records):
    >6zjyA (A:)
mapiqeyvgtliyvgvalfigvaallvgallgpkkpgraklmpyesgndpagevkrfpvh
fyvvamlfilfdvevaflwpyavsagglglygflgvlaftlllfvgflyewwkgvmr

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6zjyH (H:)
mtwsypvdpywmvalkallvvvglltafafmtlierrllarfqvrmgpnrvgpfgllqpl
adaiksifkedivvaqadrflfvlaplisvvfallafglipfgppgsffgyqpwvinldl
gilylfavselavygiflsgwasgskysllgslrssaslisyelglglallapvllvgsl
nlndivnwqkehgwlflyafpaflvyliasmaeaartpfdlpeaeqelvggyhteyssik
walfqmaeyihfitasaliptlflggwtmpvlevpylwmflkiafflfffiwiratwfrl
rydqllrfgwgflfplallwflvtalvvaldlprtyllylsalsflvllgavlytpkpar
kggga

    Sequence, based on observed residues (ATOM records):
    >6zjyH (H:)
twsypvdpywmvalkallvvvglltafafmtlierrllarfqvrmgpnrvgpfgllqpla
daiksifkedivvaqadrflfvlaplisvvfallafglipfgppgsffgyqpwvinldlg
ilylfavselavygiflsgwasgskysllgslrssaslisyelglglallapvllvgsln
lndivnwqkehgwlflyafpaflvyliasmaeaartpfdlpeaeqelvggyhteyssikw
alfqmaeyihfitasaliptlflggwtmpvlevpylwmflkiafflfffiwiratwfrlr
ydqllrfgwgflfplallwflvtalvvaldlprtyllylsalsflvllgavly

  • Chain 'J':
    Sequence, based on SEQRES records:
    >6zjyJ (J:)
mslleglalfllllsgvlvvtlrnaihaalalilnflvlagvyvaldarflgfiqvivya
gaivvlflfvimllfaaqgeigfdplvrsrplaallalgvagilaaglwgldlaftqdlk
gglpqalgpllygdwlfvllavgfllmaatvvavalvepgkasrakeaekreevar

    Sequence, based on observed residues (ATOM records):
    >6zjyJ (J:)
mslleglalfllllsgvlvvtlrnaihaalalilnflvlagvyvaldarflgfiqvivya
gaivvlflfvimllfaaqgeigfdplvrsrplaallalgvagilaaglwgldlaftqdlk
gglpqalgpllygdwlfvllavgfllmaatvvavalvepg

  • Chain 'K':
    Sequence; same for both SEQRES and ATOM records:
    >6zjyK (K:)
msylltsallfalgvygvltrrtailvflsielmlnaanlslvgfaraygldgqvaalmv
iavaaaevavglglivaifrhrestavddlselrg

  • Chain 'L':
    Sequence, based on SEQRES records:
    >6zjyL (L:)
mallgtillpllgfallglfgkrmreplpgvlasglvlasfllgaglllsggarfqaewl
pgipfsllldnlsgfmllivtgvgflihvyaigymggdpgysrffayfnlfiammltlvl
adsypvmfigwegvglasflligfwyknpqyadsarkafivnrigdlgfmlgmailwaly
gtlsiselkeamegplknpdllalaglllflgavgksaqiplmvwlpdamagptpvsali
haatmvtagvyliarssflysvlpdvsyaiavvglltaaygalsafgqtdikkivaysti
sqlgymflaagvgaywvalfhvfthaffkallflasgsvihalggeqdvrkmgglwkhlp
qtrwhaligalalgglpllsgfwskdailaatltypfggvgfyvgallvavltamyamrw
fvlvflgeerghhhpheappvmlwpnhllalgsvlagylalphplpnvlepflkpalaev
eahhlslgaewglialsaavallglwagfvffqrkvfpawylafeaasreafyvdrayna
livnplkalaealfygdrgllsgyfglggaarslgqglarlqtgylrvyallfvlgalll
lgvmrw

    Sequence, based on observed residues (ATOM records):
    >6zjyL (L:)
mallgtillpllgfallglfgkrmreplpgvlasglvlasfllgaglllsggarfqaewl
pgipfsllldnlsgfmllivtgvgflihvyaigymggdpgysrffayfnlfiammltlvl
adsypvmfigwegvglasflligfwyknpqyadsarkafivnrigdlgfmlgmailwaly
gtlsiselkeamegplknpdllalaglllflgavgksaqiplmvwlpdamagptpvsali
haatmvtagvyliarssflysvlpdvsyaiavvglltaaygalsafgqtdikkivaysti
sqlgymflaagvgaywvalfhvfthaffkallflasgsvihalggeqdvrkmgglwkhlp
qtrwhaligalalgglpllsgfwskdailaatltypfggvgfyvgallvavltamyamrw
fvlvflgeerghhhpheappvmlwpnhllalgsvlagylalphplpnvlepflkpalaev
eahhlslgaewglialsaavallglwagfvffqrkvfpawylafeaasreafyvdrayna
livnplkalaealfygdrgllsgyfglggaarslgqglarlqtgylrvyallfvlgalll
lgvmr

  • Chain 'M':
    Sequence, based on SEQRES records:
    >6zjyM (M:)
mvvlavllpvvfgallllglpralgvlgaglsfllnlylflthpggvahafqapllpgag
vywafgldglsalffltialtvflgalvarvegrflglallmeglllglfaardllvfyv
ffeaalipallmlylyggegrtralytfvlftlvgslpmlaavlgarllsgsptflledl
lahplqeeaafwvflgfalafaiktplfplhawlppfhqenhpsgladalgtlykvgvfa
ffrfaiplapegfaqaqglllflaalsalygawvafaakdfktllayaglshmgvaalgv
fsgtpegamgglyllaasgvytgglfllagrlyertgtleigryrglaqsapglaalali
lflamvglpglsgfpgefltllgaykaspwlaalaflsviasaayaltafqktfweeggs
gvkdlagaewgfallsvlalllmgvfpgyfarglhplaeafakllggga

    Sequence, based on observed residues (ATOM records):
    >6zjyM (M:)
mvvlavllpvvfgallllglpralgvlgaglsfllnlylflthpggvahafqapllpgag
vywafgldglsalffltialtvflgalvarvegrflglallmeglllglfaardllvfyv
ffeaalipallmlylyggegrtralytfvlftlvgslpmlaavlgarllsgsptflledl
lahplqeeaafwvflgfalafaiktplfplhawlppfhqenhpsgladalgtlykvgvfa
ffrfaiplapegfaqaqglllflaalsalygawvafaakdfktllayaglshmgvaalgv
fsgtpegamgglyllaasgvytgglfllagrlyertgtleigryrglaqsapglaalali
lflamvglpglsgfpgefltllgaykaspwlaalaflsviasaayaltafqktfweeggs
gvkdlagaewgfallsvlalllmgvfpgyfarglhplaeafakllgg

  • Chain 'N':
    Sequence; same for both SEQRES and ATOM records:
    >6zjyN (N:)
mtlailavfsvaltllgfvlppqgvkratllglalalasllltwgkpfafgpyavdgvsq
vftllallgalwtvglvrsgrfefyllvlyaalgmhllastrhlllmlvalealslplya
latwrrgqgleaalkyfllgalaaafflygaalfygatgslvlgapgegplyalalglll
vglgfkaalapfhfwtpdvyqgsptpvvlfmatsvkaaafaallrvaappealallvals
vvvgnlaalaqkeakrllayssiahagymalalytgnaqalgfylltyvlatglafavls
qispdrvplealrglyrkdpllglaflvamlsllglpplagfwgkylafaeaaragawgv
lvlalvtsavsayyylglglavfarpeetpfrpgppwaraavvaagvlllalgllpglvl
palaagg