PDB entry 6zhd

View 6zhd on RCSB PDB site
Description: h11-h4 bound to spike
Deposited on 2020-06-22, released 2020-07-29
The last revision was dated 2020-07-29, with a file datestamp of 2020-07-24.
Experiment type: EM
Resolution: 3.7 Å
R-factor: N/A
AEROSPACI score: 0.16 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Spike glycoprotein,Fibritin
    Species: Enterobacteria phage T4 [TaxId:10665]
    Gene: WAC
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0DTC2
      • engineered mutation (985-986)
    • Uniprot P10104
  • Chain 'B':
    Compound: Spike glycoprotein,Fibritin
    Species: Enterobacteria phage T4 [TaxId:10665]
    Gene: WAC
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0DTC2
      • engineered mutation (985-986)
    • Uniprot P10104
  • Chain 'C':
    Compound: Spike glycoprotein,Fibritin
    Species: Enterobacteria phage T4 [TaxId:10665]
    Gene: WAC
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0DTC2
      • engineered mutation (985-986)
    • Uniprot P10104
  • Chain 'D':
    Compound: Nanobody H11-H4
    Species: LAMA GLAMA [TaxId:9844]
    Database cross-references and differences (RAF-indexed):
    • PDB 6ZHD (0-End)
  • Chain 'E':
    Compound: Nanobody H11-H4
    Species: LAMA GLAMA [TaxId:9844]
    Database cross-references and differences (RAF-indexed):
    • PDB 6ZHD (0-End)
  • Chain 'F':
    Compound: Nanobody H11-H4
    Species: LAMA GLAMA [TaxId:9844]
    Database cross-references and differences (RAF-indexed):
    • PDB 6ZHD (0-End)
  • Heterogens: NAG

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6zhdA (A:)
mfvflvllplvssqcvnlttrtqlppaytnsftrgvyypdkvfrssvlhstqdlflpffs
nvtwfhaihvsgtngtkrfdnpvlpfndgvyfasteksniirgwifgttldsktqslliv
nnatnvvikvcefqfcndpflgvyyhknnkswmesefrvyssannctfeyvsqpflmdle
gkqgnfknlrefvfknidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqt
llalhrsyltpgdsssgwtagaaayyvgylqprtfllkynengtitdavdcaldplsetk
ctlksftvekgiyqtsnfrvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisn
cvadysvlynsasfstfkcygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiad
ynyklpddftgcviawnsnnldskvggnynylyrlfrksnlkpferdisteiyqagstpc
ngvegfncyfplqsygfqptngvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvn
fnfngltgtgvltesnkkflpfqqfgrdiadttdavrdpqtleilditpcsfggvsvitp
gtntsnqvavlyqdvnctevpvaihadqltptwrvystgsnvfqtragcligaehvnnsy
ecdipigagicasyqtqtnspgsassvasqsiiaytmslgaensvaysnnsiaiptnfti
svtteilpvsmtktsvdctmyicgdstecsnlllqygsfctqlnraltgiaveqdkntqe
vfaqvkqiyktppikdfggfnfsqilpdpskpskrsfiedllfnkvtladagfikqygdc
lgdiaardlicaqkfngltvlpplltdemiaqytsallagtitsgwtfgagaalqipfam
qmayrfngigvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqaln
tlvkqlssnfgaissvlndilsrldppeaevqidrlitgrlqslqtyvtqqliraaeira
sanlaatkmsecvlgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapa
ichdgkahfpregvfvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnntvydp
lqpeldsfkeeldkyfknhtspdvdlgdisginasvvniqkeidrlnevaknlneslidl
qelgkyeqgsgyipeaprdgqayvrkdgewvllstflgrslevlfqgpghhhhhhhhgsa
wshpqfekgggsgggsggsawshpqfek

    Sequence, based on observed residues (ATOM records):
    >6zhdA (A:)
aytnsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhnpvlpfndgvyfasteksni
irgwifgttldsktqsllivnnatnvvikvcefqfcndpfnnctfeyvsfknlrefvfkn
yfkiyskhtpindlpqgfsaleplvdlpiginitrfqtllaayyvgylqprtfllkynen
gtitdavdcaldplsetkctlksftvekgiyqtsnfrvqptesivrfpnitnlcpfgevf
natrfasvyawnrkrisncvadysvlynsasfstfkcygvsptklndlcftnvyadsfvi
rgdevrqiapgqtgkiadynyklpddftgcviawnsnnldskvggnynylyrlfrksnlk
pferdisteiyqagstpcngvegfncyfplqsygfqptngvgyqpyrvvvlsfellhapa
tvcgpkkstnlvknkcvnfnfngltgtgvltesnkkflpfqqfgrdiadttdavrdpqtl
eilditpcsfggvsvitpgtntsnqvavlyqdvnctevnvfqtragcligaehvnnsyec
dipigagicasyqtsqsiiaytmslgaensvaysnnsiaiptnftisvtteilpvsmtkt
svdctmyicgdstecsnlllqygsfctqlnraltgiaveqdkntqevfaqvkqiyktppi
kdfggfnfsqilpdpskpskrsfiedllfnkvtkfngltvlpplltdemiaqytsallag
titsgwtfgagaalqipfamqmayrfngigvtqnvlyenqklianqfnsaigkiqdslss
tasalgklqdvvnqnaqalntlvkqlssnfgaissvlndilsrldppeaevqidrlitgr
lqslqtyvtqqliraaeirasanlaatkmsecvlgqskrvdfcgkgyhlmsfpqsaphgv
vflhvtyvpaqeknfttapaichdgkahfpregvfvsngthwfvtqrnfyepqiittdnt
fvsgncdvvigivnntvydplqpelds

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6zhdB (B:)
mfvflvllplvssqcvnlttrtqlppaytnsftrgvyypdkvfrssvlhstqdlflpffs
nvtwfhaihvsgtngtkrfdnpvlpfndgvyfasteksniirgwifgttldsktqslliv
nnatnvvikvcefqfcndpflgvyyhknnkswmesefrvyssannctfeyvsqpflmdle
gkqgnfknlrefvfknidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqt
llalhrsyltpgdsssgwtagaaayyvgylqprtfllkynengtitdavdcaldplsetk
ctlksftvekgiyqtsnfrvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisn
cvadysvlynsasfstfkcygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiad
ynyklpddftgcviawnsnnldskvggnynylyrlfrksnlkpferdisteiyqagstpc
ngvegfncyfplqsygfqptngvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvn
fnfngltgtgvltesnkkflpfqqfgrdiadttdavrdpqtleilditpcsfggvsvitp
gtntsnqvavlyqdvnctevpvaihadqltptwrvystgsnvfqtragcligaehvnnsy
ecdipigagicasyqtqtnspgsassvasqsiiaytmslgaensvaysnnsiaiptnfti
svtteilpvsmtktsvdctmyicgdstecsnlllqygsfctqlnraltgiaveqdkntqe
vfaqvkqiyktppikdfggfnfsqilpdpskpskrsfiedllfnkvtladagfikqygdc
lgdiaardlicaqkfngltvlpplltdemiaqytsallagtitsgwtfgagaalqipfam
qmayrfngigvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqaln
tlvkqlssnfgaissvlndilsrldppeaevqidrlitgrlqslqtyvtqqliraaeira
sanlaatkmsecvlgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapa
ichdgkahfpregvfvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnntvydp
lqpeldsfkeeldkyfknhtspdvdlgdisginasvvniqkeidrlnevaknlneslidl
qelgkyeqgsgyipeaprdgqayvrkdgewvllstflgrslevlfqgpghhhhhhhhgsa
wshpqfekgggsgggsggsawshpqfek

    Sequence, based on observed residues (ATOM records):
    >6zhdB (B:)
aytnsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhaihpvlpfndgvyfasteks
niirgwifgttldsksllivnnatnvvikvcefqfcndpflgvctfeyvsfknlrefvfk
nidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqtllaayyvgylqprtf
llkynengtitdavdcaldplsetkctlksftvekgiyqtsnfrvqptesivrfpnitnl
cpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptklndlcftnv
yadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnldskvggnynylyrl
frksnlkpferdisteiyqagstpcngvegfncyfplqsygfqptngvgyqpyrvvvlsf
ellhapatvcgpkkstnlvknkcvnfnfngltgtgvltesnkkflpfqqfgrdiadttda
vrdpqtleilditpcsfggvsvitpgtntsnqvavlyqdvnctevnvfqtragcligaeh
vnnsyecdipigagicasyqtqsiiaytmslgaensvaysnnsiaiptnftisvtteilp
vsmtktsvdctmyicgdstecsnlllqygsfctqlnraltgiaveqdkntqevfaqvkqi
yktppikdfggfnfsqilpdpskpskrsfiedllfnkvtfngltvlpplltdemiaqyts
allagtitsgwtfgagaalqipfamqmayrfngigvtqnvlyenqklianqfnsaigkiq
dslsstasalgklqdvvnqnaqalntlvkqlssnfgaissvlndilsrldppeaevqidr
litgrlqslqtyvtqqliraaeirasanlaatkmsecvlgqskrvdfcgkgyhlmsfpqs
aphgvvflhvtyvpaqeknfttapaichdgkahfpregvfvsngthwfvtqrnfyepqii
ttdntfvsgncdvvigivnntvydplqpelds

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6zhdC (C:)
mfvflvllplvssqcvnlttrtqlppaytnsftrgvyypdkvfrssvlhstqdlflpffs
nvtwfhaihvsgtngtkrfdnpvlpfndgvyfasteksniirgwifgttldsktqslliv
nnatnvvikvcefqfcndpflgvyyhknnkswmesefrvyssannctfeyvsqpflmdle
gkqgnfknlrefvfknidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqt
llalhrsyltpgdsssgwtagaaayyvgylqprtfllkynengtitdavdcaldplsetk
ctlksftvekgiyqtsnfrvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisn
cvadysvlynsasfstfkcygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiad
ynyklpddftgcviawnsnnldskvggnynylyrlfrksnlkpferdisteiyqagstpc
ngvegfncyfplqsygfqptngvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvn
fnfngltgtgvltesnkkflpfqqfgrdiadttdavrdpqtleilditpcsfggvsvitp
gtntsnqvavlyqdvnctevpvaihadqltptwrvystgsnvfqtragcligaehvnnsy
ecdipigagicasyqtqtnspgsassvasqsiiaytmslgaensvaysnnsiaiptnfti
svtteilpvsmtktsvdctmyicgdstecsnlllqygsfctqlnraltgiaveqdkntqe
vfaqvkqiyktppikdfggfnfsqilpdpskpskrsfiedllfnkvtladagfikqygdc
lgdiaardlicaqkfngltvlpplltdemiaqytsallagtitsgwtfgagaalqipfam
qmayrfngigvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqaln
tlvkqlssnfgaissvlndilsrldppeaevqidrlitgrlqslqtyvtqqliraaeira
sanlaatkmsecvlgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapa
ichdgkahfpregvfvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnntvydp
lqpeldsfkeeldkyfknhtspdvdlgdisginasvvniqkeidrlnevaknlneslidl
qelgkyeqgsgyipeaprdgqayvrkdgewvllstflgrslevlfqgpghhhhhhhhgsa
wshpqfekgggsgggsggsawshpqfek

    Sequence, based on observed residues (ATOM records):
    >6zhdC (C:)
aytnsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhnpvlpfndgvyfasteksni
irgwifgttldsktqsllivnnatnvvikvcefqfcndpflgvnctfeyvsknlrefvfk
nidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqtllayyvgylqprtfl
lkynengtitdavdcaldplsetkctlksftvekgiyqtsnfrvqptesivrfpnitnlc
pfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptklndlcftnvy
adsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnldskvggnynylyrlf
rksnlkpferdisteiyqagstpcngvegfncyfplqsygfqptngvgyqpyrvvvlsfe
llhapatvcgpkkstnlvknkcvnfnfngltgtgvltesnkkflpfqqfgrdiadttdav
rdpqtleilditpcsfggvsvitpgtntsnqvavlyqdvnctevnvfqtragcligaehv
nnsyecdipigagicasyqtqsiiaytmslgaensvaysnnsiaiptnftisvtteilpv
smtktsvdctmyicgdstecsnlllqygsfctqlnraltgiaveqdkntqevfaqvkqiy
ktppikdfggfnfsqilpdpskpskrsfiedllfnkvtngltvlpplltdemiaqytsal
lagtitsgwtfgagaalqipfamqmayrfngigvtqnvlyenqklianqfnsaigkiqds
lsstasalgklqdvvnqnaqalntlvkqlssnfgaissvlndilsrldppeaevqidrli
tgrlqslqtyvtqqliraaeirasanlaatkmsecvlgqskrvdfcgkgyhlmsfpqsap
hgvvflhvtyvpaqeknfttapaichdgkahfpregvfvsngthwfvtqrnfyepqiitt
dntfvsgncdvvigivnntvydplqpelds

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6zhdD (D:)
qvqlvesggglmqaggslrlscavsgrtfstaamgwfrqapgkerefvaairwsggsayy
adsvkgrftisrdkakntvylqmnslkyedtavyycaqthyvsyllsdyatwpydywgqg
tqvtvsskhhhhhh

    Sequence, based on observed residues (ATOM records):
    >6zhdD (D:)
qvqlvesggglmqaggslrlscavsgrtfstaamgwfrqapgkerefvaairwsggsayy
adsvkgrftisrdkakntvylqmnslkyedtavyycaqthyvsyllsdyatwpydywgqg
tqvtvssk

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6zhdE (E:)
qvqlvesggglmqaggslrlscavsgrtfstaamgwfrqapgkerefvaairwsggsayy
adsvkgrftisrdkakntvylqmnslkyedtavyycaqthyvsyllsdyatwpydywgqg
tqvtvsskhhhhhh

    Sequence, based on observed residues (ATOM records):
    >6zhdE (E:)
qvqlvesggglmqaggslrlscavsgrtfstaamgwfrqapgkerefvaairwsggsayy
adsvkgrftisrdkakntvylqmnslkyedtavyycaqthyvsyllsdyatwpydywgqg
tqvtvssk

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6zhdF (F:)
qvqlvesggglmqaggslrlscavsgrtfstaamgwfrqapgkerefvaairwsggsayy
adsvkgrftisrdkakntvylqmnslkyedtavyycaqthyvsyllsdyatwpydywgqg
tqvtvsskhhhhhh

    Sequence, based on observed residues (ATOM records):
    >6zhdF (F:)
qvqlvesggglmqaggslrlscavsgrtfstaamgwfrqapgkerefvaairwsggsayy
adsvkgrftisrdkakntvylqmnslkyedtavyycaqthyvsyllsdyatwpydywgqg
tqvtvssk