PDB entry 6zh4

View 6zh4 on RCSB PDB site
Description: cryo-em structure of dna-pkcs (state 3)
Deposited on 2020-06-20, released 2020-10-21
The last revision was dated 2021-01-20, with a file datestamp of 2021-01-15.
Experiment type: EM
Resolution: 3.62 Å
R-factor: N/A
AEROSPACI score: 0.13 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA-dependent protein kinase catalytic subunit,DNA-PKcs
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P78527 (Start-4127)
    • PDB 6ZH4 (4128-4155)

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6zh4A (A:)
    magsgagvrcsllrlqetlsaadrcgaalaghqlirglgqecvlssspavlalqtslvfs
    rdfgllvfvrkslnsiefrecreeilkflciflekmgqkiapysveikntctsvytkdra
    akckipaldllikllqtfrssrlmdefkigelfskfygelalkkkipdtvlekvyellgl
    lgevhpseminnaenlfraflgelktqmtsavrepklpvlagclkglssllcnftksmee
    dpqtsreifnfvlkairpqidlkryavpsaglrlfalhasqfstclldnyvslfevllkw
    cahtnvelkkaalsalesflkqvsnmvaknaemhknklqyfmeqfygiirnvdsnnkels
    iairgyglfagpckvinakdvdfmyveliqrckqmfltqtdtgddrvyqmpsflqsvasv
    llyldtvpevytpvlehlvvmqidsfpqyspkmqlvccraivkvflalaakgpvlrncis
    tvvhqgliricskpvvlpkgpesesedhrasgevrtgkwkvptykdyvdlfrhllssdqm
    mdsiladeaffsvnssseslnhllydefvksvlkivekldltleiqtvgeqengdeapgv
    wmiptsdpaanlhpakpkdfsafinlvefcreilpekqaeffepwvysfsyelilqstrl
    plisgfykllsitvrnakkikyfegvspkslkhspedpekyscfalfvkfgkevavkmkq
    ykdellascltfllslphniieldvrayvpalqmafklglsytplaevglnaleewsiyi
    drhvmqpyykdilpcldgylktsalsdetknnwevsalsraaqkgfnkvvlkhlkktknl
    ssneaisleeirirvvqmlgslggqinknlltvtssdemmksyvawdrekrlsfavpfre
    mkpvifldvflprvtelaltasdrqtkvaacellhsmvmfmlgkatqmpeggqgappmyq
    lykrtfpvllrlacdvdqvtrqlyeplvmqlihwftnnkkfesqdtvalleaildgivdp
    vdstlrdfcgrcireflkwsikqitpqqqekspvntkslfkrlyslalhpnafkrlgasl
    afnniyrefreeeslveqfvfealviymeslalahadekslgtiqqccdaidhlcriiek
    khvslnkakkrrlprgfppsaslclldlvkwllahcgrpqtecrhksielfykfvpllpg
    nrspnlwlkdvlkeegvsflintfegggcgqpsgilaqptllylrgpfslqatlcwldll
    laalecyntfigertvgalqvlgteaqssllkavafflesiamhdiiaaekcfgtgaagn
    rtspqegerynyskctvvvrimeftttllntspegwkllkkdlcnthlmrvlvqtlcepa
    sigfnigdvqvmahlpdvcvnlmkalkmspykdilethlrekitaqsieelcavnlygpd
    aqvdrsrlaavvsackqlhragllhnilpsqstdlhhsvgtellslvykgiapgderqcl
    psldlsckqlasgllelafafgglcerlvslllnpavlstaslgssqgsvihfshgeyfy
    slfsetintellknldlavlelmqssvdntkmvsavlngmldqsfreranqkhqglklat
    tilqhwkkcdswwakdspletkmavlallakilqidssvsfntshgsfpevfttyislla
    dtkldlhlkgqavtllpfftsltggsleelrrvleqlivahfpmqsrefppgtprfnnyv
    dcmkkfldalelsqspmllelmtevlcreqqhvmeelfqssfrriarrgscvtqvglles
    vyemfrkddprlsftrqsfvdrslltllwhcsldalreffstivvdaidvlksrftklne
    stfdtqitkkmgyykildvmysrlpkddvhakeskinqvfhgscitegneltktliklcy
    daftenmagenqllerrrlyhcaayncaisviccvfnelkfyqgflfsekpeknllifen
    lidlkrrynfpvevevpmerkkkyieirkeareaangdsdgpsymsslsyladstlseem
    sqfdfstgvqsysyssqdprpatgrfrrreqrdptvhddvlelemdelnrhecmapltal
    vkhmhrslgppqgeedsvprdlpswmkflhgklgnpivplnirlflaklvinteevfrpy
    akhwlspllqlaasennggegihymvveivatilswtglatptgvpkdevlanrllnflm
    khvfhpkravfrhnleiiktlvecwkdclsipyrlifekfsgkdpnskdnsvgiqllgiv
    mandlppydpqcgiqsseyfqalvnnmsfvrykevyaaaaevlglilryvmerknilees
    lcelvakqlkqhqntmedkfivclnkvtksfppladrfmnavffllpkfhgvlktlclev
    vlcrvegmtelyfqlkskdfvqvmrhrdderqkvcldiiykmmpklkpvelrellnpvve
    fvshpsttcreqmynilmwihdnyrdpesetdndsqeifklakdvliqglidenpglqli
    irnfwshetrlpsntldrllalnslyspkievhflslatnfllemtsmspdypnpmfehp
    lsecefqeytidsdwrfrstvltpmfvetqasqgtlqtrtqegslsarwpvagqiratqq
    qhdftltqtadgrssfdwltgsstdplvdhtspssdsllfahkrserlqraplksvgpdf
    gkkrlglpgdevdnkvkgaagrtdllrlrrrfmrdqeklslmyarkgvaeqkrekeikse
    lkmkqdaqvvlyrsyrhgdlpdiqikhsslitplqavaqrdpiiakqlfsslfsgilkem
    dkfktlseknnitqkllqdfnrflnttfsffppfvsciqdiscqhaallsldpaavsagc
    laslqqpvgirlleeallrllpaelpakrvrgkarlppdvlrwvelaklyrsigeydvlr
    giftseigtkqitqsallaearsdyseaakqydealnkqdwvdgepteaekdfwelasld
    cynhlaewksleycstasidsenppdlnkiwsepfyqetylpymirsklklllqgeadqs
    lltfidkamhgelqkailelhysqelsllyllqddvdrakyyiqngiqsfmqnyssidvl
    lhqsrltklqsvqalteiqefisfiskqgnlssqvplkrllntwtnrypdakmdpmniwd
    diitnrcfflskieekltplpednsmnvdqdgdpsdrmevqeqeedisslirsckfsmkm
    kmidsarkqnnfslamkllkelhkesktrddwlvswvqsycrlshcrsrsqgcseqvltv
    lktvslldennvssylsknilafrdqnillgttyriianalssepaclaeieedkarril
    elsgsssedsekviaglyqrafqhlseavqaaeeeaqppswscgpaagvidaymtladfc
    dqqlrkeeenasvidsaelqaypalvvekmlkalklnsnearlkfprllqiierypeetl
    slmtkeissvpcwqfiswishmvalldkdqavavqhsveeitdnypqaivypfiissesy
    sfkdtstghknkefvarikskldqggviqdfinaldqlsnpellfkdwsndvraelaktp
    vnkkniekmyermyaalgdpkapglgafrrkfiqtfgkefdkhfgkggskllrmklsdfn
    ditnmlllkmnkdskppgnlkecspwmsdfkveflrneleipgqydgrgkplpeyhvria
    gfdervtvmaslrrpkriiirghderehpflvkggedlrqdqrveqlfqvmngilaqdsa
    csqralqlrtysvvpmtsrlgliewlentvtlkdlllntmsqeekaaylsdprappceyk
    dwltkmsgkhdvgaymlmykganrtetvtsfrkreskvpadllkrafvrmstspeaflal
    rshfasshalicishwilgigdrhlnnfmvametggvigidfghafgsatqflpvpelmp
    frltrqfinlmlpmketglmysimvhalrafrsdpglltntmdvfvkepsfdwknfeqkm
    lkkggswiqeinvaeknwyprqkicyakrklaganpavitcdelllghekapafrdyvav
    argskdhniraqepesglseetqvkclmdqatdpnilgrtwegwepwmxxxxxxxxxxxx
    xxxxxxxxxxxxxxxx
    

    Sequence, based on observed residues (ATOM records):
    >6zh4A (A:)
    rcsllrlqetlsaadrcgaalaghqlirglgqecvlssspavlalqtslvfsrdfgllvf
    vrkslnsiefrecreeilkflciflekmgqkiapysveikntctsvytkdaldllikllq
    tfrssrlmdefkigelfskfygelalkkkipdtvlekvyellgllgevhpseminnaenl
    fraflgelktqmlpvlagclkglssllcnftksmeedpqtsreifnfvlkairpqidlkr
    yavpsaglrlfalhasqfstclldnyvslfevllkwcahtnvelkkaalsalesflkqvs
    nmvaknaemhknklqyfmeqfygiirnvdsnnkelsiairgyglfagpckvinakdvdfm
    yveliqrckqmfltqtdtgddrvyqmpsflqsvasvllyldtvpevytpvlehlvvmqid
    sfpqyspkmqlvccraivkvflalaakgpvlrncistvvhqgliricskpvvlpwkvpty
    kdyvdlfrhllssdqmmdsiladeaffsvnssseslnhllydefvksvlkivekldltle
    iqmiptsdpaanlhpakpkdfsafinlvefcreilpekqaeffepwvysfsyelilqstr
    lplisgfykllsitvrnakkikyfegvspdpekyscfalfvkfgkevavkmkqykdella
    scltfllslphniieldvrayvpalqmafklglsytplaevglnaleewsiyidrhvmqp
    yykdilpcldgylktsalsleeirirvvqmlgslggqinknlltvtssdemmksyvawdr
    ekrlsfavpfremkpvifldvflprvtelaltastkvaacellhsmvmfmlgkatqmgap
    pmyqlykrtfpvllrlacdvdqvtrqlyeplvmqlihwftnnkkfesqdtvalleaildg
    ivdpvdstlrdfcgrcireflkwsikqitpqqqekspvntkslfkrlyslalhpnafkrl
    gaslafnniyrefreeeslveqfvfealviymeslalahadekslgtiqqccdaidhlcr
    iiekkhvslnkakkrrlprgfppsaslclldlvkwllahcgrpqtecrhksielfykfvp
    llpgnrspnlwlkdvlkeegvsflintfegggcgqpsgilaqptllylrgpfslqatlcw
    ldlllaalecyntfigertvgalqvlgteaqssllkavafflesiamhdiiaaekctgaa
    gnrtspqegerynyskctvvvrimeftttllntspegwkllkkdlcnthlmrvlvqtlce
    pasigfnigdvqvmahlpdvcvnlmkalkmspykdilethlrekitaqsieelcavnlyg
    pdaqvdrsrlaavvsackqlhragllhnilpsqstdlhhsvgtellslvykgiapgderq
    clpsldlsckqlasgllelafafgglcerlvslllnpavlstasvihfshgeyfyslfse
    tintellknldlavlelmqssvdntkmvsavlngmldqsfreranqkhqglklattilqh
    wkkcdswwakdspletkmavlallakilqidssvsfntshgsfpevfttyislladtkld
    lhlkgqavtllpfftsltggsleelrrvleqlivahfpmqsrefppgtprfnnyvdcmkk
    fldalelsqspmllelmtevlcreqqhvmeelfqssfrriarrgscvtqvgllesvyemf
    rkddprlsftrqsfvdrslltllwhcsldalreffstivvdaidvlksrftklnestfdt
    qitkkmgyykildvmysrlpkddvhakeskinqvfhgscitegneltktliklcydafte
    nmagenqllerrrlyhcaayncaisviccvfnelkfyqgflfsekpeknllifenlidlk
    mdelnrhecmapltalvkhmhrslprdlpswmkflhgklgnpivplnirlflaklvinte
    evfrpyakhwlspllqlaasennggegihymvveivatilswtglatptgvpkdevlanr
    llnflmkhvfhpkravfrhnleiiktlvecwkdclsipyrlifekfsgkdpnskdnsvgi
    qllgivmandlppydpqcgiqsseyfqalvnnmsfvrykevyaaaaevlglilryvmerk
    nileeslcelvakqlkqhqntmedkfivclnkvtksfppladrfmnavffllpkfhgvlk
    tlclevvlcrvegmtelyfqlkskdfvqvmrhrdderqkvcldiiykmmpklkpvelrel
    lnpvvefvshpsttcreqmynilmwihdnyrdpesetdndsqeifklakdvliqgliden
    pglqliirnfwshetrlpsntldrllalnslyspkievhflslatnfllemtsmspdypn
    pmfehplsecefqeytidsdltpmfvqvvlyrsyrhgdlpdiqikhsslitplqavaqrd
    piiakqlfsslfsgilkemdkfktlseknnitqkllqdfnrflnttfsffppfvsciqdi
    scqhaallsldpaavsagclaslqqpvgirlleeallrllplppdvlrwvelaklyrsig
    eydvlrgiftseigtkqitqsallaearsdyseaakqydealnkqdwvdgepteaekdfw
    elasldcynhlaewksleycstasidsenppdlnkiwsepfyqetylpymirsklklllq
    geadqslltfidkamhgelqkailelhysqelsllyllqddvdrakyyiqngiqsfmqny
    ssidvllhqsrltklqsvqalteiqefisfiskqgnlssqvplkrllntwtnrypdakmd
    pmniwddiitnrcfflskieekldisslirsckfsmkmkmidsarkqnnfslamkllkel
    hkesktrddwlvswvqsycrlshcrsrsqgcseqvltvlktvslldennvssylsknila
    frdqnillgttyriianalssepaclaeieedkarrilelsgsssedsekviaglyqraf
    qhlseavqaaeeeapaagvidaymtladfcdqqlrkeeenlqaypalvvekmlkalklns
    nearlkfprllqiierypeetlslmtkeissvpcwqfiswishmvalldkdqavavqhsv
    eeitdnypqaivypfiissesysfkdtstghknkefvarikskldqggviqdfinaldql
    snpellfkdwsndvraelaktpvnkkniekmyermyaalgdpkapglgafrrkfiqtfgk
    efdkhfgkggskllrmklsdfnditnmlllkmnkdskppgnlkecspwmsdfkveflrne
    leipgqydgrgkplpeyhvriagfdervtvmaslrrpkriiirghderehpflvkggedl
    rqdqrveqlfqvmngilaqdsacsqralqlrtysvvpmtsrlgliewlentvtlkdllln
    tmsqeekaaylsdprappceykdwltkmsgkhdvgaymlmykganrtetvtsfrkreskv
    padllkrafvrmstspeaflalrshfasshalicishwilgigdrhlnnfmvametggvi
    gidfghafgsatqflpvpelmpfrltrqfinlmlpmketglmysimvhalrafrsdpgll
    tntmdvfvkepsfdwknfeqkmlkkggswiqeinvaeknwyprqkicyakrklaganpav
    itcdelllghekapafrdyvavargskdhniraqepesglseetqvkclmdqatdpnilg
    rtwegwepwmxxxxxxxxxxxxxxxxxxxxxxxxxxxx