PDB entry 6zh2

View 6zh2 on RCSB PDB site
Description: cryo-em structure of dna-pkcs (state 1)
Deposited on 2020-06-20, released 2020-10-21
The last revision was dated 2021-01-20, with a file datestamp of 2021-01-15.
Experiment type: EM
Resolution: 3.92 Å
R-factor: N/A
AEROSPACI score: 0.11 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA-dependent protein kinase catalytic subunit,DNA-dependent protein kinase catalytic subunit,DNA-dependent protein kinase catalytic subunit,DNA-dependent protein kinase catalytic subunit,DNA-dependent protein kinase catalytic subunit,DNA-dependent protein kinase catalytic subunit,DNA-dependent protein kinase catalytic subunit,DNA-dependent protein kinase catalytic subunit,DNA-PKcs
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P78527 (Start-4127)
    • PDB 6ZH2 (4128-4155)

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6zh2A (A:)
    magsgagvrcsllrlqetlsaadrcgaalaghqlirglgqecvlssspavlalqtslvfs
    rdfgllvfvrkslnsiefrecreeilkflciflekmgqkiapysveikntctsvytkdra
    akckipaldllikllqtfrssrlmdefkigelfskfygelalkkkipdtvlekvyellgl
    lgevhpseminnaenlfraflgelktqmtsavrepklpvlagclkglssllcnftksmee
    dpqtsreifnfvlkairpqidlkryavpsaglrlfalhasqfstclldnyvslfevllkw
    cahtnvelkkaalsalesflkqvsnmvaknaemhknklqyfmeqfygiirnvdsnnkels
    iairgyglfagpckvinakdvdfmyveliqrckqmfltqtdtgddrvyqmpsflqsvasv
    llyldtvpevytpvlehlvvmqidsfpqyspkmqlvccraivkvflalaakgpvlrncis
    tvvhqgliricskpvvlpkgpesesedhrasgevrtgkwkvptykdyvdlfrhllssdqm
    mdsiladeaffsvnssseslnhllydefvksvlkivekldltleiqtvgeqengdeapgv
    wmiptsdpaanlhpakpkdfsafinlvefcreilpekqaeffepwvysfsyelilqstrl
    plisgfykllsitvrnakkikyfegvspkslkhspedpekyscfalfvkfgkevavkmkq
    ykdellascltfllslphniieldvrayvpalqmafklglsytplaevglnaleewsiyi
    drhvmqpyykdilpcldgylktsalsdetknnwevsalsraaqkgfnkvvlkhlkktknl
    ssneaisleeirirvvqmlgslggqinknlltvtssdemmksyvawdrekrlsfavpfre
    mkpvifldvflprvtelaltasdrqtkvaacellhsmvmfmlgkatqmpeggqgappmyq
    lykrtfpvllrlacdvdqvtrqlyeplvmqlihwftnnkkfesqdtvalleaildgivdp
    vdstlrdfcgrcireflkwsikqitpqqqekspvntkslfkrlyslalhpnafkrlgasl
    afnniyrefreeeslveqfvfealviymeslalahadekslgtiqqccdaidhlcriiek
    khvslnkakkrrlprgfppsaslclldlvkwllahcgrpqtecrhksielfykfvpllpg
    nrspnlwlkdvlkeegvsflintfegggcgqpsgilaqptllylrgpfslqatlcwldll
    laalecyntfigertvgalqvlgteaqssllkavafflesiamhdiiaaekcfgtgaagn
    rtspqegerynyskctvvvrimeftttllntspegwkllkkdlcnthlmrvlvqtlcepa
    sigfnigdvqvmahlpdvcvnlmkalkmspykdilethlrekitaqsieelcavnlygpd
    aqvdrsrlaavvsackqlhragllhnilpsqstdlhhsvgtellslvykgiapgderqcl
    psldlsckqlasgllelafafgglcerlvslllnpavlstaslgssqgsvihfshgeyfy
    slfsetintellknldlavlelmqssvdntkmvsavlngmldqsfreranqkhqglklat
    tilqhwkkcdswwakdspletkmavlallakilqidssvsfntshgsfpevfttyislla
    dtkldlhlkgqavtllpfftsltggsleelrrvleqlivahfpmqsrefppgtprfnnyv
    dcmkkfldalelsqspmllelmtevlcreqqhvmeelfqssfrriarrgscvtqvglles
    vyemfrkddprlsftrqsfvdrslltllwhcsldalreffstivvdaidvlksrftklne
    stfdtqitkkmgyykildvmysrlpkddvhakeskinqvfhgscitegneltktliklcy
    daftenmagenqllerrrlyhcaayncaisviccvfnelkfyqgflfsekpeknllifen
    lidlkrrynfpvevevpmerkkkyieirkeareaangdsdgpsymsslsyladstlseem
    sqfdfstgvqsysyssqdprpatgrfrrreqrdptvhddvlelemdelnrhecmapltal
    vkhmhrslgppqgeedsvprdlpswmkflhgklgnpivplnirlflaklvinteevfrpy
    akhwlspllqlaasennggegihymvveivatilswtglatptgvpkdevlanrllnflm
    khvfhpkravfrhnleiiktlvecwkdclsipyrlifekfsgkdpnskdnsvgiqllgiv
    mandlppydpqcgiqsseyfqalvnnmsfvrykevyaaaaevlglilryvmerknilees
    lcelvakqlkqhqntmedkfivclnkvtksfppladrfmnavffllpkfhgvlktlclev
    vlcrvegmtelyfqlkskdfvqvmrhrdderqkvcldiiykmmpklkpvelrellnpvve
    fvshpsttcreqmynilmwihdnyrdpesetdndsqeifklakdvliqglidenpglqli
    irnfwshetrlpsntldrllalnslyspkievhflslatnfllemtsmspdypnpmfehp
    lsecefqeytidsdwrfrstvltpmfvetqasqgtlqtrtqegslsarwpvagqiratqq
    qhdftltqtadgrssfdwltgsstdplvdhtspssdsllfahkrserlqraplksvgpdf
    gkkrlglpgdevdnkvkgaagrtdllrlrrrfmrdqeklslmyarkgvaeqkrekeikse
    lkmkqdaqvvlyrsyrhgdlpdiqikhsslitplqavaqrdpiiakqlfsslfsgilkem
    dkfktlseknnitqkllqdfnrflnttfsffppfvsciqdiscqhaallsldpaavsagc
    laslqqpvgirlleeallrllpaelpakrvrgkarlppdvlrwvelaklyrsigeydvlr
    giftseigtkqitqsallaearsdyseaakqydealnkqdwvdgepteaekdfwelasld
    cynhlaewksleycstasidsenppdlnkiwsepfyqetylpymirsklklllqgeadqs
    lltfidkamhgelqkailelhysqelsllyllqddvdrakyyiqngiqsfmqnyssidvl
    lhqsrltklqsvqalteiqefisfiskqgnlssqvplkrllntwtnrypdakmdpmniwd
    diitnrcfflskieekltplpednsmnvdqdgdpsdrmevqeqeedisslirsckfsmkm
    kmidsarkqnnfslamkllkelhkesktrddwlvswvqsycrlshcrsrsqgcseqvltv
    lktvslldennvssylsknilafrdqnillgttyriianalssepaclaeieedkarril
    elsgsssedsekviaglyqrafqhlseavqaaeeeaqppswscgpaagvidaymtladfc
    dqqlrkeeenasvidsaelqaypalvvekmlkalklnsnearlkfprllqiierypeetl
    slmtkeissvpcwqfiswishmvalldkdqavavqhsveeitdnypqaivypfiissesy
    sfkdtstghknkefvarikskldqggviqdfinaldqlsnpellfkdwsndvraelaktp
    vnkkniekmyermyaalgdpkapglgafrrkfiqtfgkefdkhfgkggskllrmklsdfn
    ditnmlllkmnkdskppgnlkecspwmsdfkveflrneleipgqydgrgkplpeyhvria
    gfdervtvmaslrrpkriiirghderehpflvkggedlrqdqrveqlfqvmngilaqdsa
    csqralqlrtysvvpmtsrlgliewlentvtlkdlllntmsqeekaaylsdprappceyk
    dwltkmsgkhdvgaymlmykganrtetvtsfrkreskvpadllkrafvrmstspeaflal
    rshfasshalicishwilgigdrhlnnfmvametggvigidfghafgsatqflpvpelmp
    frltrqfinlmlpmketglmysimvhalrafrsdpglltntmdvfvkepsfdwknfeqkm
    lkkggswiqeinvaeknwyprqkicyakrklaganpavitcdelllghekapafrdyvav
    argskdhniraqepesglseetqvkclmdqatdpnilgrtwegwepwmxxxxxxxxxxxx
    xxxxxxxxxxxxxxxx
    

    Sequence, based on observed residues (ATOM records):
    >6zh2A (A:)
    rcsllrlqetlsaadrcgaalaghqlirglgqecvlssspavlalqtslvfsrdfgllvf
    vrkslnsiefrecreeilkflciflekmgqkiapysveikntctsvytkdaldllikllq
    tfrssrlmdefkigelfskfygelalkkkipdtvlekvyellgllgevhpseminnaenl
    fraflgelktqmlpvlagclkglssllcnftksmeedpqtsreifnfvlkairpqidlkr
    yavpsaglrlfalhasqfstclldnyvslfevllkwcahtnvelkkaalsalesflkqvs
    nmvaknaemhknklqyfmeqfygiirnvdsnnkelsiairgyglfagpckvinakdvdfm
    yveliqrckqmfltqtdtgddrvyqmpsflqsvasvllyldtvpevytpvlehlvvmqid
    sfpqyspkmqlvccraivkvflalaakgpvlrncistvvhqgliricskpvvlpwkvpty
    kdyvdlfrhllssdqmmdsiladeaffsvnssseslnhllydefvksvlkivekldltle
    iqmiptsdpaanlhpakpkdfsafinlvefcreilpekqaeffepwvysfsyelilqstr
    lplisgfykllsitvrnakkikyfegvspdpekyscfalfvkfgkevavkmkqykdella
    scltfllslphniieldvrayvpalqmafklglsytplaevglnaleewsiyidrhvmqp
    yykdilpcldgylktsalsleeirirvvqmlgslggqinknlltvtssdemmksyvawdr
    ekrlsfavpfremkpvifldvflprvtelaltasdrqtkvaacellhsmvmfmlgkatqm
    gappmyqlykrtfpvllrlacdvdqvtrqlyeplvmqlihwftnnkkfesqdtvalleai
    ldgivdpvdstlrdfcgrcireflkwsikqitpqqqekspvntkslfkrlyslalhpnaf
    krlgaslafnniyrefreeeslveqfvfealviymeslalahadekslgtiqqccdaidh
    lcriiekkhvslnkakkrrlprgfppsaslclldlvkwllahcgrpqtecrhksielfyk
    fvpllpgnrspnlwlkdvlkeegvsflintfegggcgqpsgilaqptllylrgpfslqat
    lcwldlllaalecyntfigertvgalqvlgteaqssllkavafflesiamhdiiaaekct
    gaagnrtspqegerynyskctvvvrimeftttllntspegwkllkkdlcnthlmrvlvqt
    lcepasigfnigdvqvmahlpdvcvnlmkalkmspykdilethlrekitaqsieelcavn
    lygpdaqvdrsrlaavvsackqlhragllhnilpsqstdlhhsvgtellslvykgiapgd
    erqclpsldlsckqlasgllelafafgglcerlvslllnpavlstasvihfshgeyfysl
    fsetintellknldlavlelmqssvdntkmvsavlngmldqsfreranqkhqglklatti
    lqhwkkcdswwakdspletkmavlallakilqidssvsfntshgsfpevfttyislladt
    kldlhlkgqavtllpfftsltggsleelrrvleqlivahfpmqsrefppgtprfnnyvdc
    mkkfldalelsqspmllelmtevlcreqqhvmeelfqssfrriarrgscvtqvgllesvy
    emfrkddprlsftrqsfvdrslltllwhcsldalreffstivvdaidvlksrftklnest
    fdtqitkkmgyykildvmysrlpkddvhakeskinqvfhgscitegneltktliklcyda
    ftenmagenqllerrrlyhcaayncaisviccvfnelkfyqgflfsekpeknllifenli
    dlkmdelnrhecmapltalvkhmhrslprdlpswmkflhgklgnpivplnirlflaklvi
    nteevfrpyakhwlspllqlaasennggegihymvveivatilswtglatptgvpkdevl
    anrllnflmkhvfhpkravfrhnleiiktlvecwkdclsipyrlifekfsgkdpnskdns
    vgiqllgivmandlppydpqcgiqsseyfqalvnnmsfvrykevyaaaaevlglilryvm
    erknileeslcelvakqlkqhqntmedkfivclnkvtksfppladrfmnavffllpkfhg
    vlktlclevvlcrvegmtelyfqlkskdfvqvmrhrdderqkvcldiiykmmpklkpvel
    rellnpvvefvshpsttcreqmynilmwihdnyrdpesetdndsqeifklakdvliqgli
    denpglqliirnfwshetrlpsntldrllalnslyspkievhflslatnfllemtsmspd
    ypnpmfehplsecefqeytidsdwrvltpmfvqvvlyrsyrhgdlpdiqikhsslitplq
    avaqrdpiiakqlfsslfsgilkemdkfktlseknnitqkllqdfnrflnttfsffppfv
    sciqdiscqhaallsldpaavsagclaslqqpvgirlleeallrllplppdvlrwvelak
    lyrsigeydvlrgiftseigtkqitqsallaearsdyseaakqydealnkqdwvdgepte
    aekdfwelasldcynhlaewksleycstasidsenppdlnkiwsepfyqetylpymirsk
    lklllqgeadqslltfidkamhgelqkailelhysqelsllyllqddvdrakyyiqngiq
    sfmqnyssidvllhqsrltklqsvqalteiqefisfiskqgnlssqvplkrllntwtnry
    pdakmdpmniwddiitnrcfflskieekldisslirsckfsmkmkmidsarkqnnfslam
    kllkelhkesktrddwlvswvqsycrlshcrsrsqgcseqvltvlktvslldennvssyl
    sknilafrdqnillgttyriianalssepaclaeieedkarrilelsgsssedsekviag
    lyqrafqhlseavqaaeeeapaagvidaymtladfcdqqlrkeeenlqaypalvvekmlk
    alklnsnearlkfprllqiierypeetlslmtkeissvpcwqfiswishmvalldkdqav
    avqhsveeitdnypqaivypfiissesysfkdtstghknkefvarikskldqggviqdfi
    naldqlsnpellfkdwsndvraelaktpvnkkniekmyermyaalgdpkapglgafrrkf
    iqtfgkefdkhfgkggskllrmklsdfnditnmlllkmnkdskppgnlkecspwmsdfkv
    eflrneleipgqydgrgkplpeyhvriagfdervtvmaslrrpkriiirghderehpflv
    kggedlrqdqrveqlfqvmngilaqdsacsqralqlrtysvvpmtsrlgliewlentvtl
    kdlllntmsqeekaaylsdprappceykdwltkmsgkhdvgaymlmykganrtetvtsfr
    kreskvpadllkrafvrmstspeaflalrshfasshalicishwilgigdrhlnnfmvam
    etggvigidfghafgsatqflpvpelmpfrltrqfinlmlpmketglmysimvhalrafr
    sdpglltntmdvfvkepsfdwknfeqkmlkkggswiqeinvaeknwyprqkicyakrkla
    ganpavitcdelllghekapafrdyvavargskdhniraqepesglseetqvkclmdqat
    dpnilgrtwegwepwmxxxxxxxxxxxxxxxxxxxxxxxxxxxx