PDB entry 6zga

View 6zga on RCSB PDB site
Description: copii on membranes, inner coat
Deposited on 2020-06-18, released 2021-02-17
The last revision was dated 2021-04-14, with a file datestamp of 2021-04-09.
Experiment type: EM
Resolution: 4.6 Å
R-factor: N/A
AEROSPACI score: 0.06 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: protein transport protein SEC23
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: protein transport protein SEC24
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: SEC24, ANU1, YIL109C
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Small COPII coat GTPase SAR1
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: pro-pro-pro
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
    • PDB 6ZGA
  • Chain 'E':
    Compound: protein transport protein SEC23
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: protein transport protein SEC24
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: SEC24, ANU1, YIL109C
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: Small COPII coat GTPase SAR1
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: pro-pro-pro
    Species: Saccharomyces cerevisiae [TaxId:4932]
    Database cross-references and differences (RAF-indexed):
    • PDB 6ZGA (0-2)
  • Heterogens: ZN, GNP, MG

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6zgaA (A:)
dfetnedingvrftwnvfpstrsdansnvvpvgclytplkeydelnvapynpvvcsgphc
ksilnpycvidprnsswscpicnsrnhlppqytnlsqenmplelqsttieyitnkpvtvp
pifffvvdltsetenldslkesiitslsllppnaliglitygnvvqlhdlssetidrcnv
frgdreyqlealtemltgqkptgpggaashlpnamnkvtpfslnrfflpleqvefklnql
lenlspdqwsvpaghrplratgsalniaslllqgcyknipariilfasgpgtvapglivn
selkdplrshhdidsdhaqhykkackfynqiaqrvaanghtvdifagcydqigmsemkql
tdstggvllltdafstaifkqsylrlfakdeegylkmafngnmavktskdlkvqgligha
savkktdanniseseigigatstwkmaslspyhsyaiffeiantaansnpmmsapgsadr
phlaytqfittyqhssgtnrirvttvanqllpfgtpaiaasfdqeaaavlmariavhkae
tddgadvirwldrtliklcqkyadynkddpqsfrlapnfslypqftyylrrsqflsvfnn
spdetafyrhiftredttnslimiqptltsfsmeddpqpvlldsisvkpntillldtfff
iliyhgeqiaqwrkagyqddpqyadfkalleepkleaaellvdrfplprfidteaggsqa
rfllsklnpsdnyqdmarggstivltddvslqnfmthlqqvavsgqa

    Sequence, based on observed residues (ATOM records):
    >6zgaA (A:)
dfetnedingvrftwnvfpstrsdansnvvpvgclytplkeydelnvapynpvvcsgphc
ksilnpycvidprnsswscpicnsrnhlppqytnlsqenmplelqsttieyitnkpvtvp
pifffvvdltsetenldslkesiitslsllppnaliglitygnvvqlhdlssetidrcnv
frgdreyqlealtemltgqkptgpggaashlpnamnkvtpfslnrfflpleqvefklnql
lenlspdqwsvpaghrplratgsalniaslllqgcyknipariilfasgpgtvapglivn
selkdplrshhdidsdhaqhykkackfynqiaqrvaanghtvdifagcydqigmsemkql
tdstggvllltdafstaifkqsylrlfakdeegylkmafngnmavktskdlkvqgligha
savkktdanniseseigigatstwkmaslspyhsyaiffeiantahlaytqfittyqhss
gtnrirvttvanqllpfgtpaiaasfdqeaaavlmariavhkaetddgadvirwldrtli
klcqkyadynkddpqsfrlapnfslypqftyylrrsqflsvfnnspdetafyrhiftred
ttnslimiqptltsfsmeddpqpvlldsisvkpntillldtfffiliyhgeqiaqwrkag
yqddpqyadfkalleepkleaaellvdrfplprfidteaggsqarfllsklnpsdnyqdm
arggstivltddvslqnfmthlqqvavsgqa

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6zgaB (B:)
mshhkkrvypqaqlqygqnatplqqpaqfmppqdpaaagmsygqmgmppqgavpsmgqqq
fltpaqeqlhqqidqattsmndmhlhnvplvdpnaymqpqvpvqmgtplqqqqqpmaapa
ygqpsaamgqnmrpmnqlypidlltelpppitdltlpppplvippermlvpselsnaspd
yirstlnavpknssllkksklpfglvirpyqhlyddidppplnedglivrcrrcrsymnp
fvtfieqgrrwrcnfcrlandvpmqmdqsdpndpksrydrneikcavmeymapkeytlrq
pppatycflidvsqssiksgllattintllqnldsipnhdertrisilcvdnaihyfkip
ldsenneesadqinmmdiadleepflprpnsmvvslkacrqnietlltkipqifqsnlit
nfalgpalksayhliggvggkiivvsgtlpnlgigklqrrnesgvvntsketaqllscqd
sfyknftidcskvqitvdlflasedymdvaslsnlsrftagqthfypgfsgknpndivkf
stefakhismdfcmetvmrargstglrmsrfyghffnrssdlcafstmprdqsylfevnv
desimadycyvqvavllslnnsqrririitlamptteslaevyasadqlaiasfynskav
ekalnsslddarvlinksvqdilatykkeivvsntaggaplrlcanlrmfpllmhsltkh
mafrsgivpsdhrasalnnleslplkylikniypdvyslhdmadeaglpvqtedgeatgt
ivlpqpinatsslferyglylidngnelflwmggdavpalvfdvfgtqdifdipigkqei
pvvensefnqrvrniinqlrnhddvityqslyivrgaslsepvnhasarevatlrlwass
tlvedkilnnesyreflqimkarisk

    Sequence, based on observed residues (ATOM records):
    >6zgaB (B:)
rpmnqlypidlltelpppitdltlpppplvippermlvpselsnaspdyirstlnavpkn
ssllkksklpfglvirpyqhlyddidppplnedglivrcrrcrsymnpfvtfieqgrrwr
cnfcrlandvpmqmdqsdpndpksrydrneikcavmeymapkeytlrqpppatycflidv
sqssiksgllattintllqnldsipnhdertrisilcvdnaihyfkipldsenneesadq
inmmdiadleepflprpnsmvvslkacrqnietlltkipqifqsnlitnfalgpalksay
hliggvggkiivvsgtlpnlgigklqrrnesgvvntsketaqllscqdsfyknftidcsk
vqitvdlflasedymdvaslsnlsrftagqthfypgfsgknpndivkfstefakhismdf
cmetvmrargstglrmsrfyghffnrssdlcafstmprdqsylfevnvdesimadycyvq
vavllslnnsqrririitlamptteslaevyasadqlaiasfynskavekalnsslddar
vlinksvqdilatykkeivvsntaggaplrlcanlrmfpllmhsltkhmafrsgivpsdh
rasalnnleslplkylikniypdvyslhdmadeaglpvgtivlpqpinatsslferygly
lidngnelflwmggdavpalvfdvfgtqdifdipigkqeipvvensefnqrvrniinqlr
nhddvityqslyivrgaslsepvnhasarevatlrlwasstlvedkilnnesyreflqim
karisk

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6zgaC (C:)
magwdifgwfrdvlaslglwnkhgkllflgldnagkttllhmlkndrlatlqptwhptse
elaignikfttfdlgghiqarrlwkdyfpevngivflvdaadperfdearveldalfnia
elkdvpfvilgnkidapnavseaelrsalgllnttgsqriegqrpvevfmcsvvmrngyl
eafqwlsqyi

    Sequence, based on observed residues (ATOM records):
    >6zgaC (C:)
hgkllflgldnagkttllhmlkndrlatlqptwhptseelaignikfttfdlgghiqarr
lwkdyfpevngivflvdaadperfdearveldalfniaelkdvpfvilgnkidapnavse
aelrsalgllnttgsqriegqrpvevfmcsvvmrngyleafqwlsqyi

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records:
    >6zgaD (D:)
ppp

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6zgaE (E:)
dfetnedingvrftwnvfpstrsdansnvvpvgclytplkeydelnvapynpvvcsgphc
ksilnpycvidprnsswscpicnsrnhlppqytnlsqenmplelqsttieyitnkpvtvp
pifffvvdltsetenldslkesiitslsllppnaliglitygnvvqlhdlssetidrcnv
frgdreyqlealtemltgqkptgpggaashlpnamnkvtpfslnrfflpleqvefklnql
lenlspdqwsvpaghrplratgsalniaslllqgcyknipariilfasgpgtvapglivn
selkdplrshhdidsdhaqhykkackfynqiaqrvaanghtvdifagcydqigmsemkql
tdstggvllltdafstaifkqsylrlfakdeegylkmafngnmavktskdlkvqgligha
savkktdanniseseigigatstwkmaslspyhsyaiffeiantaansnpmmsapgsadr
phlaytqfittyqhssgtnrirvttvanqllpfgtpaiaasfdqeaaavlmariavhkae
tddgadvirwldrtliklcqkyadynkddpqsfrlapnfslypqftyylrrsqflsvfnn
spdetafyrhiftredttnslimiqptltsfsmeddpqpvlldsisvkpntillldtfff
iliyhgeqiaqwrkagyqddpqyadfkalleepkleaaellvdrfplprfidteaggsqa
rfllsklnpsdnyqdmarggstivltddvslqnfmthlqqvavsgqa

    Sequence, based on observed residues (ATOM records):
    >6zgaE (E:)
dfetnedingvrftwnvfpstrsdansnvvpvgclytplkeydelnvapynpvvcsgphc
ksilnpycvidprnsswscpicnsrnhlppqytnlsqenmplelqsttieyitnkpvtvp
pifffvvdltsetenldslkesiitslsllppnaliglitygnvvqlhdlssetidrcnv
frgdreyqlealtemltgqkptgpggaashlpnamnkvtpfslnrfflpleqvefklnql
lenlspdqwsvpaghrplratgsalniaslllqgcyknipariilfasgpgtvapglivn
selkdplrshhdidsdhaqhykkackfynqiaqrvaanghtvdifagcydqigmsemkql
tdstggvllltdafstaifkqsylrlfakdeegylkmafngnmavktskdlkvqgligha
savkktdanniseseigigatstwkmaslspyhsyaiffeianthlaytqfittyqhssg
tnrirvttvanqllpfgtpaiaasfdqeaaavlmariavhkaetddgadvirwldrtlik
lcqkyadynkddpqsfrlapnfslypqftyylrrsqflsvfnnspdetafyrhiftredt
tnslimiqptltsfsmeddpqpvlldsisvkpntillldtfffiliyhgeqiaqwrkagy
qddpqyadfkalleepkleaaellvdrfplprfidteaggsqarfllsklnpsdnyqdma
rggstivltddvslqnfmthlqqvavsgqa

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6zgaF (F:)
mshhkkrvypqaqlqygqnatplqqpaqfmppqdpaaagmsygqmgmppqgavpsmgqqq
fltpaqeqlhqqidqattsmndmhlhnvplvdpnaymqpqvpvqmgtplqqqqqpmaapa
ygqpsaamgqnmrpmnqlypidlltelpppitdltlpppplvippermlvpselsnaspd
yirstlnavpknssllkksklpfglvirpyqhlyddidppplnedglivrcrrcrsymnp
fvtfieqgrrwrcnfcrlandvpmqmdqsdpndpksrydrneikcavmeymapkeytlrq
pppatycflidvsqssiksgllattintllqnldsipnhdertrisilcvdnaihyfkip
ldsenneesadqinmmdiadleepflprpnsmvvslkacrqnietlltkipqifqsnlit
nfalgpalksayhliggvggkiivvsgtlpnlgigklqrrnesgvvntsketaqllscqd
sfyknftidcskvqitvdlflasedymdvaslsnlsrftagqthfypgfsgknpndivkf
stefakhismdfcmetvmrargstglrmsrfyghffnrssdlcafstmprdqsylfevnv
desimadycyvqvavllslnnsqrririitlamptteslaevyasadqlaiasfynskav
ekalnsslddarvlinksvqdilatykkeivvsntaggaplrlcanlrmfpllmhsltkh
mafrsgivpsdhrasalnnleslplkylikniypdvyslhdmadeaglpvqtedgeatgt
ivlpqpinatsslferyglylidngnelflwmggdavpalvfdvfgtqdifdipigkqei
pvvensefnqrvrniinqlrnhddvityqslyivrgaslsepvnhasarevatlrlwass
tlvedkilnnesyreflqimkarisk

    Sequence, based on observed residues (ATOM records):
    >6zgaF (F:)
rpmnqlypidlltelpppitdltlpppplvippermlvpselsnaspdyirstlnavpkn
ssllkksklpfglvirpyqhlyddidppplnedglivrcrrcrsymnpfvtfieqgrrwr
cnfcrlandvpmqmdqsdpndpksrydrneikcavmeymapkeytlrqpppatycflidv
sqssiksgllattintllqnldsipnhdertrisilcvdnaihyfkipldsenneesadq
inmmdiadleepflprpnsmvvslkacrqnietlltkipqifqsnlitnfalgpalksay
hliggvggkiivvsgtlpnlgigklqrrnesgvvntsketaqllscqdsfyknftidcsk
vqitvdlflasedymdvaslsnlsrftagqthfypgfsgknpndivkfstefakhismdf
cmetvmrargstglrmsrfyghffnrssdlcafstmprdqsylfevnvdesimadycyvq
vavllslnnsqrririitlamptteslaevyasadqlaiasfynskavekalnsslddar
vlinksvqdilatykkeivvsntaggaplrlcanlrmfpllmhsltkhmafrsgivpsdh
rasalnnleslplkylikniypdvyslhdmadeaglpgtivlpqpinatsslferyglyl
idngnelflwmggdavpalvfdvfgtqdifdipigkqeipvvensefnqrvrniinqlrn
hddvityqslyivrgaslsepvnhasarevatlrlwasstlvedkilnnesyreflqimk
arisk

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6zgaG (G:)
magwdifgwfrdvlaslglwnkhgkllflgldnagkttllhmlkndrlatlqptwhptse
elaignikfttfdlgghiqarrlwkdyfpevngivflvdaadperfdearveldalfnia
elkdvpfvilgnkidapnavseaelrsalgllnttgsqriegqrpvevfmcsvvmrngyl
eafqwlsqy

    Sequence, based on observed residues (ATOM records):
    >6zgaG (G:)
hgkllflgldnagkttllhmlkndrlatlqptwhptseelaignikfttfdlgghiqarr
lwkdyfpevngivflvdaadperfdearveldalfniaelkdvpfvilgnkidapnavse
aelrsalgllnttgsqriegqrpvevfmcsvvmrngyleafqwlsqy

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records:
    >6zgaH (H:)
ppp