PDB entry 6zfu

View 6zfu on RCSB PDB site
Description: crystal structure of bovine cytochrome bc1 in complex with quinolone inhibitor rka066
Deposited on 2020-06-17, released 2021-06-30
The last revision was dated 2021-06-30, with a file datestamp of 2021-06-25.
Experiment type: XRAY
Resolution: 3.5 Å
R-factor: N/A
AEROSPACI score: 0.16 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Cytochrome b-c1 complex subunit 1, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P31800 (0-443)
      • conflict (224-225)
  • Chain 'B':
    Compound: Cytochrome b-c1 complex subunit 2, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: cytochrome b
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Cytochrome c1, heme protein, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Cytochrome b-c1 complex subunit Rieske, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Cytochrome b-c1 complex subunit 7
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: Cytochrome b-c1 complex subunit 8
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: cytochrome b-c1 complex subunit 6, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: Cytochrome b-c1 complex subunit Rieske, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: Cytochrome b-c1 complex subunit 9
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: JHE, PG4, 6PE, CDL, HEM, LMT, PEE, HEC, PO4, FES, PX4, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >6zfuA (A:)
atyaqalqsvpetqvsqldnglrvaseqssqptctvgvwidagsryeseknngagyfveh
lafkgtknrpgnalekevesmgahlnaystrehtayyikalskdlpkavelladivqncs
ledsqiekerdvilqelqendtsmrdvvfnylhatafqgtplaqsvegpsenvrklsrad
lteylsrhykaprmvlaaagglehrqlldlaqkhfsglsgtydeetvptlspcrftgsqi
chredglplahvaiavegpgwahpdnvalqvanaiighydctygggahlssplasiaatn
klcqsfqtfnicyadtgllgahfvcdhmsiddmmfvlqgqwmrlctsatesevlrgknll
rnalvshldgttpvcedigrslltygrriplaewesriaevdarvvrevcskyfydqcpa
vagfgpieqlpdynrirsgmfwlr

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6zfuB (B:)
hpqdleftrlpnglviaslenyapasriglfikagsryensnnlgtshllrlasslttkg
assfkitrgieavggklsvtstrenmaytveclrddvdilmefllnvttapefrrwevaa
lqpqlridkavalqnpqahvienlhaaayrnalanslycpdyrigkvtpvelhdyvqnhf
tsarmaliglgvshpvlkqvaeqflnirgglglsgakakyhggeireqngdslvhaalva
esaaigsaeanafsvlqhvlgagphvkrgsnatsslyqavakgvhqpfdvsafnasysds
glfgfytisqaasagdvikaaynqvktiaqgnlsnpdvqaaknklkagylmsvessegfl
devgsqalaagsytppstvlqqidavadadvinaakkfvsgrksmaasgnlghtpfidel

    Sequence, based on observed residues (ATOM records):
    >6zfuB (B:)
hpqdleftrlpnglviaslenyapasriglfikagsryensnnlgtshllrlasslttkg
assfkitrgieavggklsvtstrenmaytveclrddvdilmefllnvttapefrrwevaa
lqpqlridkavalqnpqahvienlhaaayrnalanslycpdyrigkvtpvelhdyvqnhf
tsarmaliglgvshpvlkqvaeqflnirggakakyhggeireqngdslvhaalvaesaai
gsaeanafsvlqhvlgagphvkrgsnatsslyqavakgvhqpfdvsafnasysdsglfgf
ytisqaasagdvikaaynqvktiaqgnlsnpdvqaaknklkagylmsvessegfldevgs
qalaagsytppstvlqqidavadadvinaakkfvsgrksmaasgnlghtpfidel

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records:
    >6zfuC (C:)
tnirkshplmkivnnafidlpapsnisswwnfgsllgiclilqiltglflamhytsdttt
afssvthicrdvnygwiirymhangasmfficlymhvgrglyygsytfletwnigvilll
tvmatafmgyvlpwgqmsfwgatvitnllsaipyigtnlvewiwggfsvdkatltrffaf
hfilpfiimaiamvhllflhetgsnnptgissdvdkipfhpyytikdilgalllilalml
lvlfapdllgdpdnytpanplntpphikpewyflfayailrsipnklggvlalafsilil
alipllhtskqrsmmfrplsqclfwalvadlltltwiggqpvehpyitigqlasvlyfll
ilvlmptagtienkllkw

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records:
    >6zfuD (D:)
dlelhppsypwshrgllssldhtsirrgfqvykqvcsschsmdyvayrhlvgvcytedea
kalaeevevqdgpnedgemfmrpgklsdyfpkpypnpeaaraanngalppdlsyivrarh
ggedyvfslltgycepptgvslreglyfnpyfpgqaigmappiynevlefddgtpatmsq
vakdvctflrwaaepehdhrkrmglkmllmmglllplvyamkrhkwsvlksrklayrpp

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records:
    >6zfuE (E:)
shtdikvpdfsdyrrpevldstksskessearkgfsylvtatttvgvayaaknvvsqfvs
smsasadvlamskieiklsdipegknmafkwrgkplfvrhrtkkeidqeaavevsqlrdp
qhdlervkkpewviligvcthlgcvpianagdfggyycpchgshydasgrirkgpaplnl
evpsyeftsddmvivg

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records:
    >6zfuF (F:)
rwlegirkwyynaagfnklglmrddtihenddvkeairrlpenlyndrvfrikraldlsm
rqqilpkeqwtkyeedksylepylkevirerkereewak

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records:
    >6zfuG (G:)
rqfghltrvrhvityslspfeqrafphyfskgipnvlrrtracilrvappfvafylvytw
gtqefekskrknpa

  • Chain 'H':
    Sequence; same for both SEQRES and ATOM records:
    >6zfuH (H:)
lvdplttvreqceqlekcvkarerlelcdervssrsqteedcteelldflhardhcvahk
lfnsl

  • Chain 'I':
    Sequence; same for both SEQRES and ATOM records:
    >6zfuI (I:)
avpatsespvldlkrsvlcreslrgqaagrplvasvslnvpasvry

  • Chain 'J':
    Sequence; same for both SEQRES and ATOM records:
    >6zfuJ (J:)
aptltarlysllfrrtstfaltivvgalfferafdqgadaiyehinegklwkhikhkye