PDB entry 6zdx
View 6zdx on RCSB PDB site
Description: RIFIN variable region bound to LILRB1 ectodomain
Class: immune system
Keywords: RIFIN, LILRB1, inhibitory immune receptor, malaria, infected-erythrocyte, Plasmodium falciparum, IMMUNE SYSTEM
Deposited on
2020-06-15, released
2020-07-22
The last revision prior to the SCOPe 2.08 freeze date was dated
2020-11-25, with a file datestamp of
2020-11-20.
Experiment type: XRAY
Resolution: 3 Å
R-factor: N/A
AEROSPACI score: 0.2
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Rifin
Species: Plasmodium falciparum 3D7 [TaxId:36329]
Gene: PF3D7_1254800
Database cross-references and differences (RAF-indexed):
- Chain 'B':
Compound: Leukocyte immunoglobulin-like receptor subfamily B member 1
Species: Homo sapiens [TaxId:9606]
Gene: LILRB1
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6zdxb1, d6zdxb2, d6zdxb3, d6zdxb4 - Heterogens: NAG
PDB Chain Sequences:
- Chain 'A':
No sequence available.
- Chain 'B':
Sequence, based on SEQRES records: (download)
>6zdxB (B:)
mgilpspgmpallslvsllsvllmgcvaetgghlpkptlwaepgsvitqgspvtlrcqgg
qetqeyrlyrekktalwitripqelvkkgqfpipsitwehagryrcyygsdtagrsessd
plelvvtgayikptlsaqpspvvnsggnvilqcdsqvafdgfslckegedehpqclnsqp
hargssraifsvgpvspsrrwwyrcyaydsnspyewslpsdllellvlgvskkpslsvqp
gpivapeetltlqcgsdagynrfvlykdgerdflqlagaqpqaglsqanftlgpvsrsyg
gqyrcygahnlssewsapsdpldiliagqfydrvslsvqpgptvasgenvtllcqsqgwm
qtflltkegaaddpwrlrstyqsqkyqaefpmgpvtsahagtyrcygsqsskpyllthps
dplelvvsgtkhhhhhh
Sequence, based on observed residues (ATOM records): (download)
>6zdxB (B:)
hlpkptlwaepgsvitqgspvtlrcqggqetqeyrlyrekktalwitripqelvkkgqfp
ipsitwehagryrcyygsdtagrsessdplelvvtgayikptlsaqpspvvnsggnvilq
cdsqvafdgfslckegedehpqclnsqphargssraifsvgpvspsrrwwyrcyaydsns
pyewslpsdllellvlgvskkpslsvqpgpivapeetltlqcgsdagynrfvlykdgerd
flqlagaqpqaglsqanftlgpvsrsyggqyrcygahnlssewsapsdpldiliagqfyd
rvslsvqpgptvasgenvtllcqsqgwmqtflltkegaaddpwrlrstyqsqkyqaefpm
gpvtsahagtyrcygsqsskpyllthpsdplelvvs