PDB entry 6zcm
View 6zcm on RCSB PDB site
Description: Crystal structure of YTHDC1 with compound DHU_DC1_180
Class: RNA binding protein
Keywords: YTHDC1, m6A, complex, inhibitor, RNA BINDING PROTEIN
Deposited on
2020-06-11, released
2020-07-29
The last revision prior to the SCOPe 2.08 freeze date was dated
2021-03-31, with a file datestamp of
2021-03-26.
Experiment type: XRAY
Resolution: 1.24 Å
R-factor: N/A
AEROSPACI score: 0.71
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: ythdc1
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6zcma1, d6zcma2 - Chain 'B':
Compound: ythdc1
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6zcmb1, d6zcmb2 - Heterogens: QF2, SO4, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>6zcmA (A:)
mhhhhhhssgrenlyfqgtsklkyvlqdarffliksnnhenvslakakgvwstlpvnekk
lnlafrsarsvilifsvresgkfqgfarlsseshhggspihwvlpagmsakmlggvfkid
wicrrelpftksahltnpwnehkpvkigrdgqeielecgtqlcllfppdesidlyqvihk
mrh
Sequence, based on observed residues (ATOM records): (download)
>6zcmA (A:)
gtsklkyvlqdarffliksnnhenvslakakgvwstlpvnekklnlafrsarsvilifsv
resgkfqgfarlsseshhggspihwvlpagmsakmlggvfkidwicrrelpftksahltn
pwnehkpvkigrdgqeielecgtqlcllfppdesidlyqvihkm
- Chain 'B':
Sequence, based on SEQRES records: (download)
>6zcmB (B:)
mhhhhhhssgrenlyfqgtsklkyvlqdarffliksnnhenvslakakgvwstlpvnekk
lnlafrsarsvilifsvresgkfqgfarlsseshhggspihwvlpagmsakmlggvfkid
wicrrelpftksahltnpwnehkpvkigrdgqeielecgtqlcllfppdesidlyqvihk
mrh
Sequence, based on observed residues (ATOM records): (download)
>6zcmB (B:)
gtsklkyvlqdarffliksnnhenvslakakgvwstlpvnekklnlafrsarsvilifsv
resgkfqgfarlsseshhggspihwvlpagmsakmlggvfkidwicrrelpftksahltn
pwnehkpvkigrdgqeielecgtqlcllfppdesidlyqvihkm