SCOPe 2.08: Structural Classification of Proteins

PDB entry 6zb5

View 6zb5 on RCSB PDB site
Description: sars cov-2 spike protein, closed conformation, c3 symmetry
Deposited on 2020-06-07, released 2020-09-30
The last revision was dated 2020-11-18, with a file datestamp of 2020-11-13.
Experiment type: EM
Resolution: 2.85 Å
R-factor: N/A
AEROSPACI score: 0.21 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: Spike glycoprotein
Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
Gene: S, 2
Database cross-references and differences (RAF-indexed):
- Uniprot P0DTC2
  - conflict (674)
Chain 'B':
Compound: Spike glycoprotein
Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
Gene: S, 2
Database cross-references and differences (RAF-indexed):
- Uniprot P0DTC2
  - conflict (674)
Chain 'C':
Compound: Spike glycoprotein
Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
Gene: S, 2
Database cross-references and differences (RAF-indexed):
- Uniprot P0DTC2
  - conflict (674)
Heterogens: EIC, NAG

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

Chain 'A':
Sequence, based on SEQRES records:

>6zb5A (A:)
mfvflvllplvssqcvnlttrtqlppaytnsftrgvyypdkvfrssvlhstqdlflpffs
nvtwfhaihvsgtngtkrfdnpvlpfndgvyfasteksniirgwifgttldsktqslliv
nnatnvvikvcefqfcndpflgvyyhknnkswmesefrvyssannctfeyvsqpflmdle
gkqgnfknlrefvfknidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqt
llalhrsyltpgdsssgwtagaaayyvgylqprtfllkynengtitdavdcaldplsetk
ctlksftvekgiyqtsnfrvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisn
cvadysvlynsasfstfkcygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiad
ynyklpddftgcviawnsnnldskvggnynylyrlfrksnlkpferdisteiyqagstpc
ngvegfncyfplqsygfqptngvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvn
fnfngltgtgvltesnkkflpfqqfgrdiadttdavrdpqtleilditpcsfggvsvitp
gtntsnqvavlyqdvnctevpvaihadqltptwrvystgsnvfqtragcligaehvnnsy
ecdipigagicasyqtqtnsprraasvasqsiiaytmslgaensvaysnnsiaiptnfti
svtteilpvsmtktsvdctmyicgdstecsnlllqygsfctqlnraltgiaveqdkntqe
vfaqvkqiyktppikdfggfnfsqilpdpskpskrsfiedllfnkvtladagfikqygdc
lgdiaardlicaqkfngltvlpplltdemiaqytsallagtitsgwtfgagaalqipfam
qmayrfngigvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqaln
tlvkqlssnfgaissvlndilsrldkveaevqidrlitgrlqslqtyvtqqliraaeira
sanlaatkmsecvlgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapa
ichdgkahfpregvfvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnntvydp
lqpeldsfkeeldkyfknhtspdvdlgdisginasvvniqkeidrlnevaknlneslidl
qelgkyeqyikwpsgrlvprgspgsgyipeaprdgqayvrkdgewvllstflghhhhhh

Sequence, based on observed residues (ATOM records):

>6zb5A (A:)
cvnlppaytnsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhakrfdnpvlpfndg
vyfasteksniirgwifgttldsktqsllivnnatnvvikvcefqfcndpflgvefrvys
sannctfeyvsknlrefvfknidgyfkiyskhtpilpqgfsaleplvdlpiginitrfqt
llalhrgwtagaaayyvgylqprtfllkynengtitdavdcaldplsetkctlksftvek
giyqtsnfrvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisncvadysvlyn
sasfstfkcygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddft
gcviawnsnnldskvggnynylyrlfrksnlkpferdisteiyqagstpcngvegfncyf
plqsygfqptngvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvnfnfngltgtg
vltesnkkflpfqqfgrdiadttdavrdpqtleilditpcsfggvsvitpgtntsnqvav
lyqdvncttwrvystgsnvfqtragcligaehvnnsyecdipigagicasyqqsiiaytm
slgaensvaysnnsiaiptnftisvtteilpvsmtktsvdctmyicgdstecsnlllqyg
sfctqlnraltgiaveqdkntqevfaqvkqiyktppikdfggfnfsqilpdpskpskrsf
iedllfnkvtlgfikqygdclgddlicaqkfngltvlpplltdemiaqytsallagtits
gwtfgagaalqipfamqmayrfngigvtqnvlyenqklianqfnsaigkiqdslssalgk
lqdvvnqnaqalntlvkqlssnfgaissvlndilsrldkveaevqidrlitgrlqslqty
vtqqliraaeirasanlaatkmsecvlgqskrvdfcgkgyhlmsfpqsaphgvvflhvty
vpaqeknfttapaichdgkahfpregvfvsngthwfvtqrnfyepqiittdntfvsgncd
vvigivnntvyd

Chain 'B':
Sequence, based on SEQRES records:

>6zb5B (B:)
mfvflvllplvssqcvnlttrtqlppaytnsftrgvyypdkvfrssvlhstqdlflpffs
nvtwfhaihvsgtngtkrfdnpvlpfndgvyfasteksniirgwifgttldsktqslliv
nnatnvvikvcefqfcndpflgvyyhknnkswmesefrvyssannctfeyvsqpflmdle
gkqgnfknlrefvfknidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqt
llalhrsyltpgdsssgwtagaaayyvgylqprtfllkynengtitdavdcaldplsetk
ctlksftvekgiyqtsnfrvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisn
cvadysvlynsasfstfkcygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiad
ynyklpddftgcviawnsnnldskvggnynylyrlfrksnlkpferdisteiyqagstpc
ngvegfncyfplqsygfqptngvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvn
fnfngltgtgvltesnkkflpfqqfgrdiadttdavrdpqtleilditpcsfggvsvitp
gtntsnqvavlyqdvnctevpvaihadqltptwrvystgsnvfqtragcligaehvnnsy
ecdipigagicasyqtqtnsprraasvasqsiiaytmslgaensvaysnnsiaiptnfti
svtteilpvsmtktsvdctmyicgdstecsnlllqygsfctqlnraltgiaveqdkntqe
vfaqvkqiyktppikdfggfnfsqilpdpskpskrsfiedllfnkvtladagfikqygdc
lgdiaardlicaqkfngltvlpplltdemiaqytsallagtitsgwtfgagaalqipfam
qmayrfngigvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqaln
tlvkqlssnfgaissvlndilsrldkveaevqidrlitgrlqslqtyvtqqliraaeira
sanlaatkmsecvlgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapa
ichdgkahfpregvfvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnntvydp
lqpeldsfkeeldkyfknhtspdvdlgdisginasvvniqkeidrlnevaknlneslidl
qelgkyeqyikwpsgrlvprgspgsgyipeaprdgqayvrkdgewvllstflghhhhhh

Sequence, based on observed residues (ATOM records):

>6zb5B (B:)
cvnlppaytnsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhakrfdnpvlpfndg
vyfasteksniirgwifgttldsktqsllivnnatnvvikvcefqfcndpflgvefrvys
sannctfeyvsknlrefvfknidgyfkiyskhtpilpqgfsaleplvdlpiginitrfqt
llalhrgwtagaaayyvgylqprtfllkynengtitdavdcaldplsetkctlksftvek
giyqtsnfrvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisncvadysvlyn
sasfstfkcygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddft
gcviawnsnnldskvggnynylyrlfrksnlkpferdisteiyqagstpcngvegfncyf
plqsygfqptngvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvnfnfngltgtg
vltesnkkflpfqqfgrdiadttdavrdpqtleilditpcsfggvsvitpgtntsnqvav
lyqdvncttwrvystgsnvfqtragcligaehvnnsyecdipigagicasyqqsiiaytm
slgaensvaysnnsiaiptnftisvtteilpvsmtktsvdctmyicgdstecsnlllqyg
sfctqlnraltgiaveqdkntqevfaqvkqiyktppikdfggfnfsqilpdpskpskrsf
iedllfnkvtlgfikqygdclgddlicaqkfngltvlpplltdemiaqytsallagtits
gwtfgagaalqipfamqmayrfngigvtqnvlyenqklianqfnsaigkiqdslssalgk
lqdvvnqnaqalntlvkqlssnfgaissvlndilsrldkveaevqidrlitgrlqslqty
vtqqliraaeirasanlaatkmsecvlgqskrvdfcgkgyhlmsfpqsaphgvvflhvty
vpaqeknfttapaichdgkahfpregvfvsngthwfvtqrnfyepqiittdntfvsgncd
vvigivnntvyd

Chain 'C':
Sequence, based on SEQRES records:

>6zb5C (C:)
mfvflvllplvssqcvnlttrtqlppaytnsftrgvyypdkvfrssvlhstqdlflpffs
nvtwfhaihvsgtngtkrfdnpvlpfndgvyfasteksniirgwifgttldsktqslliv
nnatnvvikvcefqfcndpflgvyyhknnkswmesefrvyssannctfeyvsqpflmdle
gkqgnfknlrefvfknidgyfkiyskhtpinlvrdlpqgfsaleplvdlpiginitrfqt
llalhrsyltpgdsssgwtagaaayyvgylqprtfllkynengtitdavdcaldplsetk
ctlksftvekgiyqtsnfrvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisn
cvadysvlynsasfstfkcygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiad
ynyklpddftgcviawnsnnldskvggnynylyrlfrksnlkpferdisteiyqagstpc
ngvegfncyfplqsygfqptngvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvn
fnfngltgtgvltesnkkflpfqqfgrdiadttdavrdpqtleilditpcsfggvsvitp
gtntsnqvavlyqdvnctevpvaihadqltptwrvystgsnvfqtragcligaehvnnsy
ecdipigagicasyqtqtnsprraasvasqsiiaytmslgaensvaysnnsiaiptnfti
svtteilpvsmtktsvdctmyicgdstecsnlllqygsfctqlnraltgiaveqdkntqe
vfaqvkqiyktppikdfggfnfsqilpdpskpskrsfiedllfnkvtladagfikqygdc
lgdiaardlicaqkfngltvlpplltdemiaqytsallagtitsgwtfgagaalqipfam
qmayrfngigvtqnvlyenqklianqfnsaigkiqdslsstasalgklqdvvnqnaqaln
tlvkqlssnfgaissvlndilsrldkveaevqidrlitgrlqslqtyvtqqliraaeira
sanlaatkmsecvlgqskrvdfcgkgyhlmsfpqsaphgvvflhvtyvpaqeknfttapa
ichdgkahfpregvfvsngthwfvtqrnfyepqiittdntfvsgncdvvigivnntvydp
lqpeldsfkeeldkyfknhtspdvdlgdisginasvvniqkeidrlnevaknlneslidl
qelgkyeqyikwpsgrlvprgspgsgyipeaprdgqayvrkdgewvllstflghhhhhh

Sequence, based on observed residues (ATOM records):

>6zb5C (C:)
cvnlppaytnsftrgvyypdkvfrssvlhstqdlflpffsnvtwfhakrfdnpvlpfndg
vyfasteksniirgwifgttldsktqsllivnnatnvvikvcefqfcndpflgvefrvys
sannctfeyvsknlrefvfknidgyfkiyskhtpilpqgfsaleplvdlpiginitrfqt
llalhrgwtagaaayyvgylqprtfllkynengtitdavdcaldplsetkctlksftvek
giyqtsnfrvqptesivrfpnitnlcpfgevfnatrfasvyawnrkrisncvadysvlyn
sasfstfkcygvsptklndlcftnvyadsfvirgdevrqiapgqtgkiadynyklpddft
gcviawnsnnldskvggnynylyrlfrksnlkpferdisteiyqagstpcngvegfncyf
plqsygfqptngvgyqpyrvvvlsfellhapatvcgpkkstnlvknkcvnfnfngltgtg
vltesnkkflpfqqfgrdiadttdavrdpqtleilditpcsfggvsvitpgtntsnqvav
lyqdvncttwrvystgsnvfqtragcligaehvnnsyecdipigagicasyqqsiiaytm
slgaensvaysnnsiaiptnftisvtteilpvsmtktsvdctmyicgdstecsnlllqyg
sfctqlnraltgiaveqdkntqevfaqvkqiyktppikdfggfnfsqilpdpskpskrsf
iedllfnkvtlgfikqygdclgddlicaqkfngltvlpplltdemiaqytsallagtits
gwtfgagaalqipfamqmayrfngigvtqnvlyenqklianqfnsaigkiqdslssalgk
lqdvvnqnaqalntlvkqlssnfgaissvlndilsrldkveaevqidrlitgrlqslqty
vtqqliraaeirasanlaatkmsecvlgqskrvdfcgkgyhlmsfpqsaphgvvflhvty
vpaqeknfttapaichdgkahfpregvfvsngthwfvtqrnfyepqiittdntfvsgncd
vvigivnntvyd