PDB entry 6zay

View 6zay on RCSB PDB site
Description: Crystal structure of Atg16L in complex with GDP-bound Rab33B
Class: protein transport
Keywords: ATG16L; autophagy; autophagosome formation; Rab33B, PROTEIN TRANSPORT
Deposited on 2020-06-06, released 2020-09-30
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-09-30, with a file datestamp of 2020-09-25.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: N/A
AEROSPACI score: 0.3 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Ras-related protein Rab-33B
    Species: Homo sapiens [TaxId:9606]
    Gene: Rab33b
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6zaya_
  • Chain 'B':
    Compound: Ras-related protein Rab-33B
    Species: Homo sapiens [TaxId:9606]
    Gene: Rab33b
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6zayb_
  • Chain 'C':
    Compound: Autophagy-related protein 16-1
    Species: Mus musculus [TaxId:10090]
    Gene: Atg16l1, Apg16l
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8C0J2 (1-End)
      • initiating methionine (0)
  • Chain 'D':
    Compound: Autophagy-related protein 16-1
    Species: Mus musculus [TaxId:10090]
    Gene: Atg16l1, Apg16l
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q8C0J2 (1-End)
      • initiating methionine (0)
  • Heterogens: GDP, MG, PO4, PEG, EDO, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6zayA (A:)
gpmrsrifkiivigdsnvgktcltyrfcagrfpdrteatigvdfreraveidgerikiql
wdtagqerfrksmvqhyyrnvhavvfvydmtnmasfhslpswieeckqhllandiprilv
gnkcdlrsaiqvptdlaqkfadthsmplfetsaknpndndhveaifmtlahklkshkplm
lsqppdngiilk

    Sequence, based on observed residues (ATOM records): (download) 
    >6zayA (A:)
rsrifkiivigdsnvgktcltyrfcagrfpdrteatigvdfreraveidgerikiqlwdt
agqerfrksmvqhyyrnvhavvfvydmtnmasfhslpswieeckqhllandiprilvgnk
cdlrsaiqvptdlaqkfadthsmplfetsaknpndndhveaifmtlahklkshkp

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6zayB (B:)
gpmrsrifkiivigdsnvgktcltyrfcagrfpdrteatigvdfreraveidgerikiql
wdtagqerfrksmvqhyyrnvhavvfvydmtnmasfhslpswieeckqhllandiprilv
gnkcdlrsaiqvptdlaqkfadthsmplfetsaknpndndhveaifmtlahklkshkplm
lsqppdngiilk

    Sequence, based on observed residues (ATOM records): (download) 
    >6zayB (B:)
rsrifkiivigdsnvgktcltyrfcagrfpdrteatigvdfreraveidgerikiqlwdt
agqerfrksmvqhyyrnvhavvfvydmtnmasfhslpswieeckqhllandiprilvgnk
cdlrsaiqvptdlaqkfadthsmplfetsaknpndndhveaifmtlahklkshkp

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.