PDB entry 6z9i

View 6z9i on RCSB PDB site
Description: Escherichia coli D-2-deoxyribose-5-phosphate aldolase - N21K mutant complex with reaction products
Class: lyase
Keywords: Aldolase, LYASE, DERA
Deposited on 2020-06-04, released 2020-11-18
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-11-25, with a file datestamp of 2020-11-20.
Experiment type: XRAY
Resolution: 1.86 Å
R-factor: N/A
AEROSPACI score: 0.46 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: deoxyribose-phosphate aldolase
    Species: Escherichia coli [TaxId:562]
    Gene: deoC, A6592_04055, A9819_24930, AJ318_04090, AML35_20375, AWE53_009755, AWF59_004780, AWG90_001355, AZZ83_003140, B9M99_13055, BHF46_08905, BIU72_19175, BIZ41_21315, BK292_12675, BK296_03525, BK375_05655, BON91_08010, BvCmsC61A_04176, BvCmsHHP001_01002, BvCmsKKP061_00143, BvCmsKSP045_01273, BvCmsKSP067_04018, BvCmsKSP076_01350, BvCmsNSP047_00091, BvCmsSINP022_00140, BZL69_04490, C4M78_04295, C7B08_10715, C7B18_26170, CDC27_23655, D2188_24830, D3P01_08005, D9D31_02570, D9E34_05115, D9G48_24275, D9I87_14825, D9I88_23755, D9K54_15785, DD762_00045, DND16_14490, DNQ45_13620, DTL90_19480, DTM45_25725, DU321_02660, DXT71_19415, E0L12_12025, E5S46_05005, E5S58_22595, E5S61_04910, EC382_07685, EL79_3891, EL80_3836, ELT23_13160, ELV08_18870, ELV15_04550, ELV28_15080, EQ825_04285, EQ830_02895, ERS085386_00787, EVY14_13465, EXX13_04350, EXX23_12990, EXX53_09895, EYY34_19360, FNJ83_01355, FV438_05665, FWK02_17600, FY127_22350, HMPREF3040_02396, NCTC10090_02419, NCTC7922_05561, NCTC9117_05294, NCTC9777_00681, NCTC9969_04462, PGD_03624, SAMEA3472056_01168, SAMEA3472108_04807, SAMEA3485101_00909, SAMEA3485113_03629, SAMEA3752559_04076, SAMEA3753300_03100, UC41_15640
    Database cross-references and differences (RAF-indexed):
    • Uniprot E2QLE1 (Start-249)
      • engineered mutation (20)
    Domains in SCOPe 2.08: d6z9ia_
  • Chain 'B':
    Compound: deoxyribose-phosphate aldolase
    Species: Escherichia coli [TaxId:562]
    Gene: deoC, A6592_04055, A9819_24930, AJ318_04090, AML35_20375, AWE53_009755, AWF59_004780, AWG90_001355, AZZ83_003140, B9M99_13055, BHF46_08905, BIU72_19175, BIZ41_21315, BK292_12675, BK296_03525, BK375_05655, BON91_08010, BvCmsC61A_04176, BvCmsHHP001_01002, BvCmsKKP061_00143, BvCmsKSP045_01273, BvCmsKSP067_04018, BvCmsKSP076_01350, BvCmsNSP047_00091, BvCmsSINP022_00140, BZL69_04490, C4M78_04295, C7B08_10715, C7B18_26170, CDC27_23655, D2188_24830, D3P01_08005, D9D31_02570, D9E34_05115, D9G48_24275, D9I87_14825, D9I88_23755, D9K54_15785, DD762_00045, DND16_14490, DNQ45_13620, DTL90_19480, DTM45_25725, DU321_02660, DXT71_19415, E0L12_12025, E5S46_05005, E5S58_22595, E5S61_04910, EC382_07685, EL79_3891, EL80_3836, ELT23_13160, ELV08_18870, ELV15_04550, ELV28_15080, EQ825_04285, EQ830_02895, ERS085386_00787, EVY14_13465, EXX13_04350, EXX23_12990, EXX53_09895, EYY34_19360, FNJ83_01355, FV438_05665, FWK02_17600, FY127_22350, HMPREF3040_02396, NCTC10090_02419, NCTC7922_05561, NCTC9117_05294, NCTC9777_00681, NCTC9969_04462, PGD_03624, SAMEA3472056_01168, SAMEA3472108_04807, SAMEA3485101_00909, SAMEA3485113_03629, SAMEA3752559_04076, SAMEA3753300_03100, UC41_15640
    Database cross-references and differences (RAF-indexed):
    • Uniprot E2QLE1 (Start-249)
      • engineered mutation (20)
    Domains in SCOPe 2.08: d6z9ib_
  • Heterogens: G3H, EDO, MG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >6z9iA (A:)
    mtdlkasslralklmdlttlkdddtdekvialchqaktpvgntaaiciyprfipiarktl
    keqgtpeiriatvtnfphgnddidialaetraaiaygadevdvvfpyralmagneqvgfd
    lvkackeacaaanvllkviietgelkdealirkaseisikagadfiktstgkvavnatpe
    sarimmevirdmgvektvgfkpaggvrtaedaqkylaiadelfgadwadarhyrfgassl
    lasllkalgh
    

    Sequence, based on observed residues (ATOM records): (download)
    >6z9iA (A:)
    dlkasslralklmdlttlkdddtdekvialchqaktpvgntaaiciyprfipiarktlke
    qgtpeiriatvtnfphgnddidialaetraaiaygadevdvvfpyralmagneqvgfdlv
    kackeacaaanvllkviietgelkdealirkaseisikagadfiktstgkvavnatpesa
    rimmevirdmgvektvgfkpaggvrtaedaqkylaiadelfgadwadarhyrfgasslla
    sllkalgh
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >6z9iB (B:)
    mtdlkasslralklmdlttlkdddtdekvialchqaktpvgntaaiciyprfipiarktl
    keqgtpeiriatvtnfphgnddidialaetraaiaygadevdvvfpyralmagneqvgfd
    lvkackeacaaanvllkviietgelkdealirkaseisikagadfiktstgkvavnatpe
    sarimmevirdmgvektvgfkpaggvrtaedaqkylaiadelfgadwadarhyrfgassl
    lasllkalgh
    

    Sequence, based on observed residues (ATOM records): (download)
    >6z9iB (B:)
    dlkasslralklmdlttlkdddtdekvialchqaktpvgntaaiciyprfipiarktlke
    qgtpeiriatvtnfphgnddidialaetraaiaygadevdvvfpyralmagneqvgfdlv
    kackeacaaanvllkviietgelkdealirkaseisikagadfiktstgkvavnatpesa
    rimmevirdmgvektvgfkpaggvrtaedaqkylaiadelfgadwadarhyrfgasslla
    sllkalgh