PDB entry 6z74

View 6z74 on RCSB PDB site
Description: structure of the transcriptional repressor atu1419 (vanr) in complex with a fortuitous citrate from agrobacterium fabrum
Deposited on 2020-05-29, released 2020-12-02
The last revision was dated 2021-01-20, with a file datestamp of 2021-01-15.
Experiment type: XRAY
Resolution: 2 Å
R-factor: N/A
AEROSPACI score: 0.4 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Transcriptional regulator, GntR family
    Species: Agrobacterium fabrum (strain C58 / ATCC 33970) [TaxId:176299]
    Gene: Atu1419
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Transcriptional regulator, GntR family
    Species: Agrobacterium fabrum (strain C58 / ATCC 33970) [TaxId:176299]
    Gene: Atu1419
    Database cross-references and differences (RAF-indexed):
    • Uniprot A9CJ36 (Start-243)
      • expression tag (244)
  • Chain 'C':
    Compound: Transcriptional regulator, GntR family
    Species: Agrobacterium fabrum (strain C58 / ATCC 33970) [TaxId:176299]
    Gene: Atu1419
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Transcriptional regulator, GntR family
    Species: Agrobacterium fabrum (strain C58 / ATCC 33970) [TaxId:176299]
    Gene: Atu1419
    Database cross-references and differences (RAF-indexed):
  • Heterogens: ZN, CIT, GOL, EDO, SO4, PEG, NA, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6z74A (A:)
mrqvdaathggravielrekilsgelpggmrlfevstaelldisrtpvrealsrlteegl
lnrlpgggfvvrrfgfadvvdaievrgvmegtaarlaaergvskvaleeidatvqqldlc
fgdrvddvdfdgyaalnrifhhqlaalcgsemirreverasslpfaspsaflpdkaniga
frrslrgaqeqhkaivaaivaregaraeavarehsrtartnleymireapeliaqvpgla
lisdhhhhhh

    Sequence, based on observed residues (ATOM records):
    >6z74A (A:)
thggravielrekilsgelpggmrlfevstaelldisrtpvrealsrlteegllnrlpgg
gfvvrrfgfadvvdaievrgvmegtaarlaaergvskvaleeidatvqqldlcfgdrvdd
vdfdgyaalnrifhhqlaalcgsemirreverasslpfaspsaflpdkanigafrrslrg
aqeqhkaivaaivaregaraeavarehsrtartnleymireapeliaqvpglalisd

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6z74B (B:)
mrqvdaathggravielrekilsgelpggmrlfevstaelldisrtpvrealsrlteegl
lnrlpgggfvvrrfgfadvvdaievrgvmegtaarlaaergvskvaleeidatvqqldlc
fgdrvddvdfdgyaalnrifhhqlaalcgsemirreverasslpfaspsaflpdkaniga
frrslrgaqeqhkaivaaivaregaraeavarehsrtartnleymireapeliaqvpgla
lisdhhhhhh

    Sequence, based on observed residues (ATOM records):
    >6z74B (B:)
thggravielrekilsgelpggmrlfevstaelldisrtpvrealsrlteegllnrlpgg
gfvvrrfgfadvvdaievrgvmegtaarlaaergvskvaleeidatvqqldlcfgdrvdd
vdfdgyaalnrifhhqlaalcgsemirreverasslpfaspsaflpdkanigafrrslrg
aqeqhkaivaaivaregaraeavarehsrtartnleymireapeliaqvpglalisdh

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6z74C (C:)
mrqvdaathggravielrekilsgelpggmrlfevstaelldisrtpvrealsrlteegl
lnrlpgggfvvrrfgfadvvdaievrgvmegtaarlaaergvskvaleeidatvqqldlc
fgdrvddvdfdgyaalnrifhhqlaalcgsemirreverasslpfaspsaflpdkaniga
frrslrgaqeqhkaivaaivaregaraeavarehsrtartnleymireapeliaqvpgla
lisdhhhhhh

    Sequence, based on observed residues (ATOM records):
    >6z74C (C:)
gravielrekilsgelpggmrlfevstaelldisrtpvrealsrlteegllnrlpgggfv
vrrfgfadvvdaievrgvmegtaarlaaergvskvaleeidatvqqldlcfgdrvddvdf
dgyaalnrifhhqlaalcgsemirreverasslpfaspsaflpdkanigafrrslrgaqe
qhkaivaaivaregaraeavarehsrtartnleymireapeliaqvpglali

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6z74D (D:)
mrqvdaathggravielrekilsgelpggmrlfevstaelldisrtpvrealsrlteegl
lnrlpgggfvvrrfgfadvvdaievrgvmegtaarlaaergvskvaleeidatvqqldlc
fgdrvddvdfdgyaalnrifhhqlaalcgsemirreverasslpfaspsaflpdkaniga
frrslrgaqeqhkaivaaivaregaraeavarehsrtartnleymireapeliaqvpgla
lisdhhhhhh

    Sequence, based on observed residues (ATOM records):
    >6z74D (D:)
ggravielrekilsgelpggmrlfevstaelldisrtpvrealsrlteegllnrlpgggf
vvrrfgfadvvdaievrgvmegtaarlaaergvskvaleeidatvqqldlcfgdrvddvd
fdgyaalnrifhhqlaalcgsemirreverasslpfaspsaflpdkanigafrrslrgaq
eqhkaivaaivaregaraeavarehsrtartnleymireapeliaqvpglalisd