PDB entry 6z5s

View 6z5s on RCSB PDB site
Description: RC-LH1(14)-W complex from Rhodopseudomonas palustris
Class: photosynthesis
Keywords: Reaction center, Light harvesting, Protein W, Quinone, PHOTOSYNTHESIS
Deposited on 2020-05-27, released 2021-01-13
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-02-10, with a file datestamp of 2021-02-05.
Experiment type: EM
Resolution: 2.65 Å
R-factor: N/A
AEROSPACI score: 0.25 (click here for full SPACI score report)

Chains and heterogens:

  • Chain '1':
    Compound: Light-harvesting complex 1 alpha chain
    Species: Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) [TaxId:258594]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6z5s1_
  • Chain '2':
    Compound: Light-harvesting complex 1 beta chain
    Species: Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) [TaxId:258594]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6z5s2_
  • Chain '3':
    Compound: Light-harvesting complex 1 alpha chain
    Species: Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) [TaxId:258594]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6z5s3_
  • Chain '4':
    Compound: Light-harvesting complex 1 beta chain
    Species: Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) [TaxId:258594]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6z5s4_
  • Chain '5':
    Compound: Light-harvesting complex 1 alpha chain
    Species: Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) [TaxId:258594]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6z5s5_
  • Chain '6':
    Compound: Light-harvesting complex 1 beta chain
    Species: Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) [TaxId:258594]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6z5s6_
  • Chain 'A':
    Compound: Light-harvesting complex 1 alpha chain
    Species: Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) [TaxId:258594]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6z5sa_
  • Chain 'B':
    Compound: Light-harvesting complex 1 beta chain
    Species: Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) [TaxId:258594]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6z5sb_
  • Chain 'C':
    Compound: Light-harvesting complex 1 alpha chain
    Species: Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) [TaxId:258594]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6z5sc_
  • Chain 'D':
    Compound: Light-harvesting complex 1 beta chain
    Species: Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) [TaxId:258594]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6z5sd_
  • Chain 'E':
    Compound: Light-harvesting complex 1 alpha chain
    Species: Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) [TaxId:258594]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6z5se_
  • Chain 'F':
    Compound: Light-harvesting complex 1 beta chain
    Species: Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) [TaxId:258594]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6z5sf_
  • Chain 'G':
    Compound: Light-harvesting complex 1 alpha chain
    Species: Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) [TaxId:258594]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6z5sg_
  • Chain 'H':
    Compound: H subunit of photosynthetic reaction center complex
    Species: Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) [TaxId:258594]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6z5sh1, d6z5sh2
  • Chain 'I':
    Compound: Light-harvesting complex 1 beta chain
    Species: Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) [TaxId:258594]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6z5si_
  • Chain 'J':
    Compound: Light-harvesting complex 1 alpha chain
    Species: Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) [TaxId:258594]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6z5sj_
  • Chain 'K':
    Compound: Light-harvesting complex 1 beta chain
    Species: Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) [TaxId:258594]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6z5sk_
  • Chain 'L':
    Compound: reaction center protein l chain
    Species: Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) [TaxId:258594]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6z5sl_
  • Chain 'M':
    Compound: reaction center protein m chain
    Species: Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) [TaxId:258594]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6z5sm_
  • Chain 'N':
    Compound: Light-harvesting complex 1 alpha chain
    Species: Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) [TaxId:258594]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6z5sn_
  • Chain 'O':
    Compound: Light-harvesting complex 1 beta chain
    Species: Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) [TaxId:258594]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6z5so_
  • Chain 'P':
    Compound: Light-harvesting complex 1 alpha chain
    Species: Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) [TaxId:258594]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6z5sp_
  • Chain 'Q':
    Compound: Light-harvesting complex 1 beta chain
    Species: Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) [TaxId:258594]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6z5sq_
  • Chain 'R':
    Compound: Light-harvesting complex 1 alpha chain
    Species: Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) [TaxId:258594]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6z5sr_
  • Chain 'S':
    Compound: Light-harvesting complex 1 beta chain
    Species: Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) [TaxId:258594]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6z5ss_
  • Chain 'T':
    Compound: Light-harvesting complex 1 alpha chain
    Species: Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) [TaxId:258594]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6z5st_
  • Chain 'U':
    Compound: Light-harvesting complex 1 beta chain
    Species: Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) [TaxId:258594]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6z5su_
  • Chain 'V':
    Compound: Light-harvesting complex 1 alpha chain
    Species: Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) [TaxId:258594]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6z5sv_
  • Chain 'W':
    Compound: Light harvesting complex 1 Protein W
    Species: Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) [TaxId:258594]
    Database cross-references and differences (RAF-indexed):
  • Chain 'X':
    Compound: Light-harvesting complex 1 beta chain
    Species: Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) [TaxId:258594]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6z5sx_
  • Chain 'Y':
    Compound: Light-harvesting complex 1 alpha chain
    Species: Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) [TaxId:258594]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6z5sy_
  • Chain 'Z':
    Compound: Light-harvesting complex 1 beta chain
    Species: Rhodopseudomonas palustris (strain ATCC BAA-98 / CGA009) [TaxId:258594]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6z5sz_
  • Heterogens: U10, QAK, PGT, LMT, FME, FE, CRT, CDL, BPH, BCL, 6PL, HOH

PDB Chain Sequences:

  • Chain '1':
    Sequence, based on SEQRES records: (download) 
    >6z5s1 (1:)
mwriwllfdprralvllfvflfglaiiihfillstsrfnwldgpraakaasislpftpps
mpv

    Sequence, based on observed residues (ATOM records): (download) 
    >6z5s1 (1:)
mwriwllfdprralvllfvflfglaiiihfillstsrfnwldgpra

  • Chain '2':
    Sequence, based on SEQRES records: (download) 
    >6z5s2 (2:)
msdgsisglseaeakefhsifvtsfflfivvavvahilawmwrpwlpkatgyamdsvhql
tsflc

    Sequence, based on observed residues (ATOM records): (download) 
    >6z5s2 (2:)
isglseaeakefhsifvtsfflfivvavvahilawmwrpwlpkatgy

  • Chain '3':
    Sequence, based on SEQRES records: (download) 
    >6z5s3 (3:)
mwriwllfdprralvllfvflfglaiiihfillstsrfnwldgpraakaasislpftpps
mpv

    Sequence, based on observed residues (ATOM records): (download) 
    >6z5s3 (3:)
mwriwllfdprralvllfvflfglaiiihfillstsrfnwldgpra

  • Chain '4':
    Sequence, based on SEQRES records: (download) 
    >6z5s4 (4:)
msdgsisglseaeakefhsifvtsfflfivvavvahilawmwrpwlpkatgyamdsvhql
tsflc

    Sequence, based on observed residues (ATOM records): (download) 
    >6z5s4 (4:)
sglseaeakefhsifvtsfflfivvavvahilawmwrpwlpkatgy

  • Chain '5':
    Sequence, based on SEQRES records: (download) 
    >6z5s5 (5:)
mwriwllfdprralvllfvflfglaiiihfillstsrfnwldgpraakaasislpftpps
mpv

    Sequence, based on observed residues (ATOM records): (download) 
    >6z5s5 (5:)
mwriwllfdprralvllfvflfglaiiihfillstsrfnwldgpra

  • Chain '6':
    Sequence, based on SEQRES records: (download) 
    >6z5s6 (6:)
msdgsisglseaeakefhsifvtsfflfivvavvahilawmwrpwlpkatgyamdsvhql
tsflc

    Sequence, based on observed residues (ATOM records): (download) 
    >6z5s6 (6:)
isglseaeakefhsifvtsfflfivvavvahilawmwrpwlp

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6z5sA (A:)
mwriwllfdprralvllfvflfglaiiihfillstsrfnwldgpraakaasislpftpps
mpv

    Sequence, based on observed residues (ATOM records): (download) 
    >6z5sA (A:)
wriwllfdprralvllfvflfglaiiihfillstsrfnwl

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6z5sB (B:)
msdgsisglseaeakefhsifvtsfflfivvavvahilawmwrpwlpkatgyamdsvhql
tsflc

    Sequence, based on observed residues (ATOM records): (download) 
    >6z5sB (B:)
isglseaeakefhsifvtsfflfivvavvahilawmwrpwlpkatgy

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6z5sC (C:)
mwriwllfdprralvllfvflfglaiiihfillstsrfnwldgpraakaasislpftpps
mpv

    Sequence, based on observed residues (ATOM records): (download) 
    >6z5sC (C:)
mwriwllfdprralvllfvflfglaiiihfillstsrfnwldgpra

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6z5sD (D:)
msdgsisglseaeakefhsifvtsfflfivvavvahilawmwrpwlpkatgyamdsvhql
tsflc

    Sequence, based on observed residues (ATOM records): (download) 
    >6z5sD (D:)
sisglseaeakefhsifvtsfflfivvavvahilawmwrpwlpkatgy

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >6z5sE (E:)
mwriwllfdprralvllfvflfglaiiihfillstsrfnwldgpraakaasislpftpps
mpv

    Sequence, based on observed residues (ATOM records): (download) 
    >6z5sE (E:)
mwriwllfdprralvllfvflfglaiiihfillstsrfnwldgpra

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >6z5sF (F:)
msdgsisglseaeakefhsifvtsfflfivvavvahilawmwrpwlpkatgyamdsvhql
tsflc

    Sequence, based on observed residues (ATOM records): (download) 
    >6z5sF (F:)
sisglseaeakefhsifvtsfflfivvavvahilawmwrpwlpkatgy

  • Chain 'G':
    Sequence, based on SEQRES records: (download) 
    >6z5sG (G:)
mwriwllfdprralvllfvflfglaiiihfillstsrfnwldgpraakaasislpftpps
mpv

    Sequence, based on observed residues (ATOM records): (download) 
    >6z5sG (G:)
mwriwllfdprralvllfvflfglaiiihfillstsrfnwldgpra

  • Chain 'H':
    Sequence, based on SEQRES records: (download) 
    >6z5sH (H:)
mqpgayldlaqvtlyvfwiffagllfylrredkregyplvadagsgtrlakigvpappdp
ktyllrggatktvpstsndrpnvaltpaapwpgapfvptgnpfadgvgpgsyaqradvpe
lgldnlpiivplraakgmfldprdpnpvgmpvvgcdgvvggtvtevwvdraevlarylev
evaksrkrvllpvpfalindpfgkvsvdairgdqfagvpttskgdqvskleedkicayyg
agtlyatplrseslv

    Sequence, based on observed residues (ATOM records): (download) 
    >6z5sH (H:)
mqpgayldlaqvtlyvfwiffagllfylrredkregyplvadagsgtrlakigvpappdp
ktyllrggatktvpstsndrpnvaltpaapwpgapfvptgnpfadgvgpgsyaqradvpe
lgldnlpiivplraakgmfldprdpnpvgmpvvgcdgvvggtvtevwvdraevlarylev
evaksrkrvllpvpfalindpfgkvsvdairgdqfagvpttskgdqvskleedkicayyg
agtlyatplrs

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >6z5sI (I:)
msdgsisglseaeakefhsifvtsfflfivvavvahilawmwrpwlpkatgyamdsvhql
tsflc

    Sequence, based on observed residues (ATOM records): (download) 
    >6z5sI (I:)
isglseaeakefhsifvtsfflfivvavvahilawmwrpwlpkatgy

  • Chain 'J':
    Sequence, based on SEQRES records: (download) 
    >6z5sJ (J:)
mwriwllfdprralvllfvflfglaiiihfillstsrfnwldgpraakaasislpftpps
mpv

    Sequence, based on observed residues (ATOM records): (download) 
    >6z5sJ (J:)
mwriwllfdprralvllfvflfglaiiihfillstsrfnwldgpr

  • Chain 'K':
    Sequence, based on SEQRES records: (download) 
    >6z5sK (K:)
msdgsisglseaeakefhsifvtsfflfivvavvahilawmwrpwlpkatgyamdsvhql
tsflc

    Sequence, based on observed residues (ATOM records): (download) 
    >6z5sK (K:)
isglseaeakefhsifvtsfflfivvavvahilawmwrpwlpkatgy

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >6z5sL (L:)
mamlsfekkyrvrggtliggdlfdfwvgpfyvgifgvmtvffaligialiawntalgptw
nlwqisvnppdakyglgfaplaeggiwqwvsicatgafvtwalreveicrklgigfhvpf
afsfaifayvtlvvirpvlmgswsygfpygifthldwvsntgysygqfhynpahmiaitf
ffttclalalhgglvlsalnpdrgepvkspehentvfrdlvgysigtigihrlglflals
avffsavcmiisgpvlaeggswpdwwnwwrnlpiwnp

    Sequence, based on observed residues (ATOM records): (download) 
    >6z5sL (L:)
amlsfekkyrvrggtliggdlfdfwvgpfyvgifgvmtvffaligialiawntalgptwn
lwqisvnppdakyglgfaplaeggiwqwvsicatgafvtwalreveicrklgigfhvpfa
fsfaifayvtlvvirpvlmgswsygfpygifthldwvsntgysygqfhynpahmiaitff
fttclalalhgglvlsalnpdrgepvkspehentvfrdlvgysigtigihrlglflalsa
vffsavcmiisgpvlaeggswpdwwnwwrnlpiwnp

  • Chain 'M':
    Sequence, based on SEQRES records: (download) 
    >6z5sM (M:)
maqyqniftqvqvegpayagvplrpgsspretqttfnywlgkigdaqvgpvylgftgvcs
llcgfvaieiiglnmlasvdwspieflrqfcwlaleppkpeygltipplkeggwwlmagf
fltvsialwwvrtyrrsralgmgthvswafasaillylalgfiqpllmgswseappfgvf
phldwtnnfsikygnlyynpfhclsiaflygsallfamhgatilavsryggereieqmld
rgtaleraalfwrwtmgfnataesihrwawwfavlcpltgaigiiltgpvvdnwfdwgvk
hglappr

    Sequence, based on observed residues (ATOM records): (download) 
    >6z5sM (M:)
yqniftqvqvegpayagvplrpgsspretqttfnywlgkigdaqvgpvylgftgvcsllc
gfvaieiiglnmlasvdwspieflrqfcwlaleppkpeygltipplkeggwwlmagfflt
vsialwwvrtyrrsralgmgthvswafasaillylalgfiqpllmgswseappfgvfphl
dwtnnfsikygnlyynpfhclsiaflygsallfamhgatilavsryggereieqmldrgt
aleraalfwrwtmgfnataesihrwawwfavlcpltgaigiiltgpvvdnwfdwgvkhg

  • Chain 'N':
    Sequence, based on SEQRES records: (download) 
    >6z5sN (N:)
mwriwllfdprralvllfvflfglaiiihfillstsrfnwldgpraakaasislpftpps
mpv

    Sequence, based on observed residues (ATOM records): (download) 
    >6z5sN (N:)
mwriwllfdprralvllfvflfglaiiihfillstsrfnwldgpra

  • Chain 'O':
    Sequence, based on SEQRES records: (download) 
    >6z5sO (O:)
msdgsisglseaeakefhsifvtsfflfivvavvahilawmwrpwlpkatgyamdsvhql
tsflc

    Sequence, based on observed residues (ATOM records): (download) 
    >6z5sO (O:)
sisglseaeakefhsifvtsfflfivvavvahilawmwrpwlpkatgy

  • Chain 'P':
    Sequence, based on SEQRES records: (download) 
    >6z5sP (P:)
mwriwllfdprralvllfvflfglaiiihfillstsrfnwldgpraakaasislpftpps
mpv

    Sequence, based on observed residues (ATOM records): (download) 
    >6z5sP (P:)
mwriwllfdprralvllfvflfglaiiihfillstsrfnwldgpra

  • Chain 'Q':
    Sequence, based on SEQRES records: (download) 
    >6z5sQ (Q:)
msdgsisglseaeakefhsifvtsfflfivvavvahilawmwrpwlpkatgyamdsvhql
tsflc

    Sequence, based on observed residues (ATOM records): (download) 
    >6z5sQ (Q:)
sisglseaeakefhsifvtsfflfivvavvahilawmwrpwlpkatgy

  • Chain 'R':
    Sequence, based on SEQRES records: (download) 
    >6z5sR (R:)
mwriwllfdprralvllfvflfglaiiihfillstsrfnwldgpraakaasislpftpps
mpv

    Sequence, based on observed residues (ATOM records): (download) 
    >6z5sR (R:)
mwriwllfdprralvllfvflfglaiiihfillstsrfnwldgpra

  • Chain 'S':
    Sequence, based on SEQRES records: (download) 
    >6z5sS (S:)
msdgsisglseaeakefhsifvtsfflfivvavvahilawmwrpwlpkatgyamdsvhql
tsflc

    Sequence, based on observed residues (ATOM records): (download) 
    >6z5sS (S:)
sisglseaeakefhsifvtsfflfivvavvahilawmwrpwlpkatgy

  • Chain 'T':
    Sequence, based on SEQRES records: (download) 
    >6z5sT (T:)
mwriwllfdprralvllfvflfglaiiihfillstsrfnwldgpraakaasislpftpps
mpv

    Sequence, based on observed residues (ATOM records): (download) 
    >6z5sT (T:)
mwriwllfdprralvllfvflfglaiiihfillstsrfnwldgpra

  • Chain 'U':
    Sequence, based on SEQRES records: (download) 
    >6z5sU (U:)
msdgsisglseaeakefhsifvtsfflfivvavvahilawmwrpwlpkatgyamdsvhql
tsflc

    Sequence, based on observed residues (ATOM records): (download) 
    >6z5sU (U:)
isglseaeakefhsifvtsfflfivvavvahilawmwrpwlpkatgy

  • Chain 'V':
    Sequence, based on SEQRES records: (download) 
    >6z5sV (V:)
mwriwllfdprralvllfvflfglaiiihfillstsrfnwldgpraakaasislpftpps
mpv

    Sequence, based on observed residues (ATOM records): (download) 
    >6z5sV (V:)
mwriwllfdprralvllfvflfglaiiihfillstsrfnwldgpra

  • Chain 'W':
    No sequence available.

  • Chain 'X':
    Sequence, based on SEQRES records: (download) 
    >6z5sX (X:)
msdgsisglseaeakefhsifvtsfflfivvavvahilawmwrpwlpkatgyamdsvhql
tsflc

    Sequence, based on observed residues (ATOM records): (download) 
    >6z5sX (X:)
isglseaeakefhsifvtsfflfivvavvahilawmwrpwlpkatgy

  • Chain 'Y':
    Sequence, based on SEQRES records: (download) 
    >6z5sY (Y:)
mwriwllfdprralvllfvflfglaiiihfillstsrfnwldgpraakaasislpftpps
mpv

    Sequence, based on observed residues (ATOM records): (download) 
    >6z5sY (Y:)
mwriwllfdprralvllfvflfglaiiihfillstsrfnwldgpra

  • Chain 'Z':
    Sequence, based on SEQRES records: (download) 
    >6z5sZ (Z:)
msdgsisglseaeakefhsifvtsfflfivvavvahilawmwrpwlpkatgyamdsvhql
tsflc

    Sequence, based on observed residues (ATOM records): (download) 
    >6z5sZ (Z:)
isglseaeakefhsifvtsfflfivvavvahilawmwrpwlpkatgy