PDB entry 6z3q

View 6z3q on RCSB PDB site
Description: Structure of EV71 in complex with a protective antibody 38-1-10A Fab
Class: virus
Keywords: EV71, antibody 38-3-11A, antibody 38-1-10A, EV71-Fab complex, VIRUS
Deposited on 2020-05-21, released 2020-09-02
The last revision prior to the SCOPe 2.07 freeze date was dated 2020-09-02, with a file datestamp of 2020-08-28.
Experiment type: EM
Resolution: 2.7 Å
R-factor: N/A
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: vp1
    Species: ENTEROVIRUS A71 [TaxId:39054]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6z3qa_
  • Chain 'B':
    Compound: vp2
    Species: ENTEROVIRUS A71 [TaxId:39054]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6z3qb_
  • Chain 'C':
    Compound: vp3
    Species: ENTEROVIRUS A71 [TaxId:39054]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.07: d6z3qc_
  • Chain 'D':
    Compound: vp4
    Species: ENTEROVIRUS A71 [TaxId:39054]
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: heavy chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6Z3Q
  • Chain 'L':
    Compound: light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6Z3Q
    Domains in SCOPe 2.07: d6z3ql_
  • Heterogens: SPH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6z3qA (A:)
gdrvadmiessignsvsraltqalpaptgqntqvsshrldtgevpalqaaeigassntsd
esmietrcvlnshstaettldsffsraglvgeidlplegttnpngyanwdiditgyaqmr
rkvelftymrfdaeftfvactptgqvvpqllqymfvppgapkpesreslawqtatnpsvf
vkltdppaqvsvpfmspasayqwfydgyptfgehkqekdleygacpnnmmgtfsvrtvgs
skskyalvvriymrmkhvrawiprpmrnqnylfkanpnyagdsikptgtsrnaittl

    Sequence, based on observed residues (ATOM records): (download) 
    >6z3qA (A:)
rvadmiessignsvsraltqalpaptgqntqvsshrldtgevpalqaaeigassntsdes
mietrcvlnshstaettldsffsraglvgeidlplegttnpngyanwdiditgyaqmrrk
velftymrfdaeftfvactptgqvvpqllqymfvppgapkpesreslawqtatnpsvfvk
ltdppaqvsvpfmspasayqwfydgyptfgehkqekdleygacpnnmmgtfsvrtvgssk
skyalvvriymrmkhvrawiprpmrnqnylfkanpnyagdsikptgtsrnaittl

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6z3qB (B:)
spsaeacgysdrvaqltignstittqeaaniivgygewpsycsdddatavdkptrpdvsv
nrfytldtklweksskgwywkfpdvltetgvfgqnaqfhylyrsgfcihvqcnaskfhqg
allvailpeyvigtvaggtgtedshppyiqtqpgadgfelqhpyvldagipisqltvcph
qwinlrtnncatiivpymntlpfdsalnhcnfgllvvpispldfdqgatpvipititlap
mcsefaglrqavtq

    Sequence, based on observed residues (ATOM records): (download) 
    >6z3qB (B:)
sdrvaqltignstittqeaaniivgygewpsycsdddatavdkptrpdvsvnrfytldtk
lweksskgwywkfpdvltetgvfgqnaqfhylyrsgfcihvqcnaskfhqgallvailpe
yvigtvaggtgtedshppyiqtqpgadgfelqhpyvldagipisqltvcphqwinlrtnn
catiivpymntlpfdsalnhcnfgllvvpispldfdqgatpvipititlapmcsefaglr
qavtq

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >6z3qC (C:)
gfptelkpgtnqflttddgvsapilpnfhptpcihipgevrnllelcqvetilevnnvpt
natslmerlrfpvsaqagkgelcavfradpgrdgpwqstmlgqlcgyytqwsgslevtfm
ftgsfmatgkmliaytppggplpkdratamlgthviwdfglqssvtlvipwisnthyrah
ardgvfdyyttglvsiwyqtnyvvpigapntayiialaaaqknftmklckdtshilqtas
iq

  • Chain 'D':
    No sequence available.

  • Chain 'H':
    No sequence available.

  • Chain 'L':
    Sequence, based on SEQRES records: (download) 
    >6z3qL (L:)
mgcvadiqmtqspsslsasvgdrvtitcrasqgirndlgwyqqkpgkapklliyaasslq
sgvpsrfsgsgsgtdftltisslqpedfatyyclqdynylltfgggtkveikrtvaapsv
fifppsdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstysl
sstltlskadyekhkvyacevthqglsspvtksfnrgec

    Sequence, based on observed residues (ATOM records): (download) 
    >6z3qL (L:)
diqmtqspsslsasvgdrvtitcrasqgirndlgwyqqkpgkapklliyaasslqsgvps
rfsgsgsgtdftltisslqpedfatyyclqdynylltfgggtkvei