PDB entry 6z1u

View 6z1u on RCSB PDB site
Description: bovine atp synthase f1c8-peripheral stalk domain, state 3
Deposited on 2020-05-14, released 2020-09-09
The last revision was dated 2020-09-30, with a file datestamp of 2020-09-25.
Experiment type: EM
Resolution: 3.47 Å
R-factor: N/A
AEROSPACI score: 0.15 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: ATP synthase subunit alpha, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P19483
      • microheterogeneity (480)
  • Chain 'B':
    Compound: ATP synthase subunit alpha, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P19483
      • microheterogeneity (480)
  • Chain 'C':
    Compound: ATP synthase subunit alpha, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
    • Uniprot P19483
      • microheterogeneity (480)
  • Chain 'D':
    Compound: ATP synthase subunit beta, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: ATP synthase subunit beta, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: ATP synthase subunit beta, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: ATP synthase subunit gamma, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: ATP synthase subunit delta, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: ATP synthase subunit epsilon, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: ATPase inhibitor, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Gene: ATPIF1, ATPI
    Database cross-references and differences (RAF-indexed):
  • Chain 'K':
    Compound: ATP synthase F(0) complex subunit C2, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
  • Chain 'L':
    Compound: ATP synthase F(0) complex subunit C2, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
  • Chain 'M':
    Compound: ATP synthase F(0) complex subunit C2, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
  • Chain 'N':
    Compound: ATP synthase F(0) complex subunit C2, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
  • Chain 'O':
    Compound: ATP synthase F(0) complex subunit C2, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
  • Chain 'P':
    Compound: ATP synthase F(0) complex subunit C2, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
  • Chain 'Q':
    Compound: ATP synthase F(0) complex subunit C2, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
  • Chain 'R':
    Compound: ATP synthase F(0) complex subunit C2, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
  • Chain 'S':
    Compound: ATP synthase subunit o, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
  • Chain 'b':
    Compound: ATP synthase f(0) complex subunit b1, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
  • Chain 'h':
    Compound: ATP synthase-coupling factor 6, mitochondrial
    Species: Bos taurus [TaxId:9913]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: ATP, MG, ADP, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6z1uA (A:)
    ektgtaevssileerilgadtsvdleetgrvlsigdgiarvhglrnvqaeemvefssglk
    gmslnlepdnvgvvvfgndklikegdivkrtgaivdvpvgeellgrvvdalgnaidgkgp
    igskarrrvglkapgiiprisvrepmqtgikavdslvpigrgqreliigdrqtgktsiai
    dtiinqkrfndgtdekkklyciyvaigqkrstvaqlvkrltdadamkytivvsatasdaa
    plqylapysgcsmgeyfrdngkhaliiyddlskqavayrqmslllrrppgreaypgdvfy
    lhsrlleraakmndafgggsltalpvietqagdvsayiptnvisitdgqifletelfykg
    irpainvglsvsrvgsaaqtramkqvagtmklelaqyrevaafaqfgsdldaatqqllsr
    gvrltellkqgqyspmaieeqvaviyagvrgyldklepskitkfenaflshvisqhqall
    gkirtdgkiseesdaklkeivtnflagfea
    

    Sequence, based on observed residues (ATOM records):
    >6z1uA (A:)
    vssileerilgadtsvdleetgrvlsigdgiarvhglrnvqaeemvefssglkgmslnle
    pdnvgvvvfgndklikegdivkrtgaivdvpvgeellgrvvdalgnaidgkgpigskarr
    rvglkapgiiprisvrepmqtgikavdslvpigrgqreliigdrqtgktsiaidtiinqk
    rfndgtdekkklyciyvaigqkrstvaqlvkrltdadamkytivvsatasdaaplqylap
    ysgcsmgeyfrdngkhaliiyddlskqavayrqmslllrrppgreaypgdvfylhsrlle
    raakmndafgggsltalpvietqagdvsayiptnvisitdgqifletelfykgirpainv
    glsvsrvgsaaqtramkqvagtmklelaqyrevaafaqfgsdldaatqqllsrgvrltel
    lkqgqyspmaieeqvaviyagvrgyldklepskitkfenaflshvisqhqallgkirtdg
    kiseesdaklkeivtnflagf
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6z1uB (B:)
    ektgtaevssileerilgadtsvdleetgrvlsigdgiarvhglrnvqaeemvefssglk
    gmslnlepdnvgvvvfgndklikegdivkrtgaivdvpvgeellgrvvdalgnaidgkgp
    igskarrrvglkapgiiprisvrepmqtgikavdslvpigrgqreliigdrqtgktsiai
    dtiinqkrfndgtdekkklyciyvaigqkrstvaqlvkrltdadamkytivvsatasdaa
    plqylapysgcsmgeyfrdngkhaliiyddlskqavayrqmslllrrppgreaypgdvfy
    lhsrlleraakmndafgggsltalpvietqagdvsayiptnvisitdgqifletelfykg
    irpainvglsvsrvgsaaqtramkqvagtmklelaqyrevaafaqfgsdldaatqqllsr
    gvrltellkqgqyspmaieeqvaviyagvrgyldklepskitkfenaflshvisqhqall
    gkirtdgkiseesdaklkeivtnflagfea
    

    Sequence, based on observed residues (ATOM records):
    >6z1uB (B:)
    ktgtaevssileerilgadtsvdleetgrvlsigdgiarvhglrnvqaeemvefssglkg
    mslnlepdnvgvvvfgndklikegdivkrtgaivdvpvgeellgrvvdalgnaidgkgpi
    gskarrrvglkapgiiprisvrepmqtgikavdslvpigrgqreliigdrqtgktsiaid
    tiinqkrfndgtdekkklyciyvaigqkrstvaqlvkrltdadamkytivvsatasdaap
    lqylapysgcsmgeyfrdngkhaliiyddlskqavayrqmslllrrppgreaypgdvfyl
    hsrlleraakmndafgggsltalpvietqagdvsayiptnvisitdgqifletelfykgi
    rpainvglsvsrvgsaaqtramkqvagtmklelaqyrevaafldaatqqllsrgvrltel
    lkqgqyspmaieeqvaviyagvrgyldklepskitkfenaflshvisqhqallgkirtdg
    kiseesdaklkeivtnflagfe
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6z1uC (C:)
    ektgtaevssileerilgadtsvdleetgrvlsigdgiarvhglrnvqaeemvefssglk
    gmslnlepdnvgvvvfgndklikegdivkrtgaivdvpvgeellgrvvdalgnaidgkgp
    igskarrrvglkapgiiprisvrepmqtgikavdslvpigrgqreliigdrqtgktsiai
    dtiinqkrfndgtdekkklyciyvaigqkrstvaqlvkrltdadamkytivvsatasdaa
    plqylapysgcsmgeyfrdngkhaliiyddlskqavayrqmslllrrppgreaypgdvfy
    lhsrlleraakmndafgggsltalpvietqagdvsayiptnvisitdgqifletelfykg
    irpainvglsvsrvgsaaqtramkqvagtmklelaqyrevaafaqfgsdldaatqqllsr
    gvrltellkqgqyspmaieeqvaviyagvrgyldklepskitkfenaflshvisqhqall
    gkirtdgkiseesdaklkeivtnflagfea
    

    Sequence, based on observed residues (ATOM records):
    >6z1uC (C:)
    vdleetgrvlsigdgiarvhglrnvqaeemvefssglkgmslnlepdnvgvvvfgndkli
    kegdivkrtgaivdvpvgeellgrvvdalgnaidgkgpigskarrrvglkapgiiprisv
    repmqtgikavdslvpigrgqreliigdrqtgktsiaidtiinqkrfndgtdekkklyci
    yvaigqkrstvaqlvkrltdadamkytivvsatasdaaplqylapysgcsmgeyfrdngk
    haliiyddlskqavayrqmslllrrppgreaypgdvfylhsrlleraakmndafgggslt
    alpvietqagdvsayiptnvisitdgqifletelfykgirpainvglsvsrvgsaaqtra
    mkqvagtmklelaqyrevaafaqfldaatqqllsrgvrltellkqgqyspmaieeqvavi
    yagvrgyldklepskitkfenaflshvisqhqallgkirtdgkiseesdaklkeivtnfl
    agf
    

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6z1uD (D:)
    aaqaspspkagattgrivavigavvdvqfdeglppilnalevqgretrlvlevaqhlges
    tvrtiamdgteglvrgqkvldsgapiripvgpetlgrimnvigepidergpiktkqfaai
    haeapefvemsveqeilvtgikvvdllapyakggkiglfggagvgktvlimelinnvaka
    hggysvfagvgertregndlyhemiesgvinlkdatskvalvygqmneppgararvaltg
    ltvaeyfrdqegqdvllfidnifrftqagsevsallgripsavgyqptlatdmgtmqeri
    tttkkgsitsvqaiyvpaddltdpapattfahldattvlsraiaelgiypavdpldstsr
    imdpnivgsehydvargvqkilqdykslqdiiailgmdelseedkltvsrarkiqrflsq
    pfqvaevftghlgklvplketikgfqqilageydhlpeqafymvgpieeavakadklaee
    hs
    

    Sequence, based on observed residues (ATOM records):
    >6z1uD (D:)
    ttgrivavigavvdvqfdeglppilnalevqgretrlvlevaqhlgestvrtiamdgteg
    lvrgqkvldsgapiripvgpetlgrimnvigepidergpiktkqfaaihaeapefvemsv
    eqeilvtgikvvdllapyakggkiglfggagvgktvlimelinnvakahggysvfagvge
    rtregndlyhemiesgvinlkdatskvalvygqmneppgararvaltgltvaeyfrdqeg
    qdvllfidnifrftqagsevsallgripsavgyqptlatdmgtmqeritttkkgsitsvq
    aiyvpaddltdpapattfahldattvlsraiaelgiypavdpldstsrimdpnivgsehy
    dvargvqkilqdykslqdiiailgmdelseedkltvsrarkiqrflsqpfqvaevftghl
    gklvplketikgfqqilageydhlpeqafymvgpieeavakadklaeeh
    

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6z1uE (E:)
    aaqaspspkagattgrivavigavvdvqfdeglppilnalevqgretrlvlevaqhlges
    tvrtiamdgteglvrgqkvldsgapiripvgpetlgrimnvigepidergpiktkqfaai
    haeapefvemsveqeilvtgikvvdllapyakggkiglfggagvgktvlimelinnvaka
    hggysvfagvgertregndlyhemiesgvinlkdatskvalvygqmneppgararvaltg
    ltvaeyfrdqegqdvllfidnifrftqagsevsallgripsavgyqptlatdmgtmqeri
    tttkkgsitsvqaiyvpaddltdpapattfahldattvlsraiaelgiypavdpldstsr
    imdpnivgsehydvargvqkilqdykslqdiiailgmdelseedkltvsrarkiqrflsq
    pfqvaevftghlgklvplketikgfqqilageydhlpeqafymvgpieeavakadklaee
    hs
    

    Sequence, based on observed residues (ATOM records):
    >6z1uE (E:)
    ttgrivavigavvdvqfdeglppilnalevqgretrlvlevaqhlgestvrtiamdgteg
    lvrgqkvldsgapiripvgpetlgrimnvigepidergpiktkqfaaihaeapefvemsv
    eqeilvtgikvvdllapyakggkiglfggagvgktvlimelinnvakahggysvfagvge
    rtregndlyhemiesgvinlkdatskvalvygqmneppgararvaltgltvaeyfrdqeg
    qdvllfidnifrftqagsevsallgripsavgyqptlatdmgtmqeritttkkgsitsvq
    aiyvpaddltdpapattfahldattvlsraiaelgiypavdpldstsrimdpnivgsehy
    dvargvqkilqdykslqdiiailgmdelseedkltvsrarkiqrflsqpfqvaevftghl
    gklvplketikgfqqilageydhlpeqafymvgpieeavakadklae
    

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6z1uF (F:)
    aaqaspspkagattgrivavigavvdvqfdeglppilnalevqgretrlvlevaqhlges
    tvrtiamdgteglvrgqkvldsgapiripvgpetlgrimnvigepidergpiktkqfaai
    haeapefvemsveqeilvtgikvvdllapyakggkiglfggagvgktvlimelinnvaka
    hggysvfagvgertregndlyhemiesgvinlkdatskvalvygqmneppgararvaltg
    ltvaeyfrdqegqdvllfidnifrftqagsevsallgripsavgyqptlatdmgtmqeri
    tttkkgsitsvqaiyvpaddltdpapattfahldattvlsraiaelgiypavdpldstsr
    imdpnivgsehydvargvqkilqdykslqdiiailgmdelseedkltvsrarkiqrflsq
    pfqvaevftghlgklvplketikgfqqilageydhlpeqafymvgpieeavakadklaee
    hs
    

    Sequence, based on observed residues (ATOM records):
    >6z1uF (F:)
    ttgrivavigavvdvqfdeglppilnalevqgretrlvlevaqhlgestvrtiamdgteg
    lvrgqkvldsgapiripvgpetlgrimnvigepidergpiktkqfaaihaeapefvemsv
    eqeilvtgikvvdllapyakggkiglfggagvgktvlimelinnvakahggysvfagvge
    rtregndlyhemiesgvinlkdatskvalvygqmneppgararvaltgltvaeyfrdqeg
    qdvllfidnifrftqagsevsallgripsavgyqptlatdmgtmqeritttkkgsitsvq
    aiyvpaddltdpapattfahldattvlsraiaelgiypavdpldstsrimdpnivgsehy
    dvargvqkilqdykslqdiiailgmdelseedkltvsrarkiqrflsqpfqvaevftghl
    gklvplketikgfqqilageydhlpeqafymvgpieeavakadklae
    

  • Chain 'G':
    Sequence, based on SEQRES records:
    >6z1uG (G:)
    atlkditrrlksikniqkitksmkmvaaakyaraerelkparvygvgslalyekadiktp
    edkkkhliigvssdrglcgaihssvakqmkseaanlaaagkevkiigvgdkirsilhrth
    sdqflvtfkevgrrpptfgdasvialellnsgyefdegsiifnrfrsvisykteekpifs
    ldtissaesmsiyddidadvlrnyqeyslaniiyyslkesttseqsarmtamdnasknas
    emidkltltfnrtrqavitkelieiisgaaald
    

    Sequence, based on observed residues (ATOM records):
    >6z1uG (G:)
    atlkditrrlksikniqkitksmkmvaaakyaraerelkparvygvgslalyekadiktp
    edkkkhliigvssdrglcgaihssvakqmkseaanlaaagkevkiigvgdkirsilhrth
    sdqflvtfkevgrrpptfgdasvialellnsgyefdegsiifnrfrsvisykteekpifs
    ldtissaesmsiyddidadvlrnyqeyslaniiyyslkesttseqsarmtamdnasknas
    emidkltltfnrtrqavitkelieiisgaaal
    

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6z1uH (H:)
    aeaaaaqapaagpgqmsftfasptqvffnsanvrqvdvptqtgafgilaahvptlqvlrp
    glvvvhaedgttskyfvssgsvtvnadssvqllaeeavtldmldlgaakanlekaqsell
    gaadeatraeiqirieanealvkale
    

    Sequence, based on observed residues (ATOM records):
    >6z1uH (H:)
    msftfasptqvffnsanvrqvdvptqtgafgilaahvptlqvlrpglvvvhaedgttsky
    fvssgsvtvnadssvqllaeeavtldmldlgaakanlekaqsellgaadeatraeiqiri
    eanealvkale
    

  • Chain 'I':
    Sequence, based on SEQRES records:
    >6z1uI (I:)
    vaywrqaglsyirysqicakavrdalktefkanamktsgstikivkvkke
    

    Sequence, based on observed residues (ATOM records):
    >6z1uI (I:)
    vaywrqaglsyirysqicakavrdalktefkanamktsgstikivkv
    

  • Chain 'J':
    Sequence, based on SEQRES records:
    >6z1uJ (J:)
    gsesgdnvrssagavrdaggafgkreqaeeeryfrarakeqlaalkkhheneishhakei
    hhhhhh
    

    Sequence, based on observed residues (ATOM records):
    >6z1uJ (J:)
    vrssagavrdaggafgkreqaeeeryfrarakeqlaalkkhheneis
    

  • Chain 'K':
    Sequence, based on SEQRES records:
    >6z1uK (K:)
    didtaakfigagaatvgvagsgagigtvfgsliigyarnpslkqqlfsyailgfalseam
    glfclmvaflilfam
    

    Sequence, based on observed residues (ATOM records):
    >6z1uK (K:)
    didtaakfigagaatvgvagsgagigtvfgsliigyarnpslkqqlfsyailgfalseam
    glfclmvaflilfa
    

  • Chain 'L':
    Sequence, based on SEQRES records:
    >6z1uL (L:)
    didtaakfigagaatvgvagsgagigtvfgsliigyarnpslkqqlfsyailgfalseam
    glfclmvaflilfam
    

    Sequence, based on observed residues (ATOM records):
    >6z1uL (L:)
    didtaakfigagaatvgvagsgagigtvfgsliigyarnpslkqqlfsyailgfalseam
    glfclmvaflilfa
    

  • Chain 'M':
    Sequence; same for both SEQRES and ATOM records:
    >6z1uM (M:)
    didtaakfigagaatvgvagsgagigtvfgsliigyarnpslkqqlfsyailgfalseam
    glfclmvaflilfam
    

  • Chain 'N':
    Sequence; same for both SEQRES and ATOM records:
    >6z1uN (N:)
    didtaakfigagaatvgvagsgagigtvfgsliigyarnpslkqqlfsyailgfalseam
    glfclmvaflilfam
    

  • Chain 'O':
    Sequence; same for both SEQRES and ATOM records:
    >6z1uO (O:)
    didtaakfigagaatvgvagsgagigtvfgsliigyarnpslkqqlfsyailgfalseam
    glfclmvaflilfam
    

  • Chain 'P':
    Sequence, based on SEQRES records:
    >6z1uP (P:)
    didtaakfigagaatvgvagsgagigtvfgsliigyarnpslkqqlfsyailgfalseam
    glfclmvaflilfam
    

    Sequence, based on observed residues (ATOM records):
    >6z1uP (P:)
    didtaakfigagaatvgvagsgagigtvfgsliigyarnpslkqqlfsyailgfalseam
    glfclmvaflilfa
    

  • Chain 'Q':
    Sequence; same for both SEQRES and ATOM records:
    >6z1uQ (Q:)
    didtaakfigagaatvgvagsgagigtvfgsliigyarnpslkqqlfsyailgfalseam
    glfclmvaflilfam
    

  • Chain 'R':
    Sequence; same for both SEQRES and ATOM records:
    >6z1uR (R:)
    didtaakfigagaatvgvagsgagigtvfgsliigyarnpslkqqlfsyailgfalseam
    glfclmvaflilfam
    

  • Chain 'S':
    Sequence, based on SEQRES records:
    >6z1uS (S:)
    faklvrppvqiygiegryatalysaaskqnkleqvekellrvgqilkepkmaasllnpyv
    krsvkvkslsdmtakekfspltsnlinllaengrltntpavisafstmmsvhrgevpctv
    ttasaldeatltelktvlksflskgqvlklevkidpsimggmivrigekyvdmsaktkiq
    klsramreil
    

    Sequence, based on observed residues (ATOM records):
    >6z1uS (S:)
    faklvrppvqiygiegryatalysaaskqnkleqvekellrvgqilkepkmaasllnpyv
    krsvkvkslsdmtakekfspltsnlinllaengrltntpavisafstmmsvhrgevpctv
    ttasaldeatltelktvlksflskgqvlklevkidpsimggmivrigekyvdmsaktkiq
    klsramr
    

  • Chain 'b':
    Sequence, based on SEQRES records:
    >6z1ub (b:)
    pvpplpehggkvrfglipeeffqflypktgvtgpyvlgtglilyllskeiyvitpetfsa
    istigflvyivkkygasvgefadklneqkiaqleevkqasikqiqdaidmeksqqalvqk
    rhylfdvqrnniamalevtyrerlhrvyrevknrldyhisvqnmmrqkeqehminwvekr
    vvqsisaqqeketiakciadlkllskkaqaqpvm
    

    Sequence, based on observed residues (ATOM records):
    >6z1ub (b:)
    nmmrqkeqehminwvekrvvqsisaqqeketiakciadlkllskkaq
    

  • Chain 'h':
    Sequence, based on SEQRES records:
    >6z1uh (h:)
    nkeldpvqklfvdkireyrtkrqtsggpvdagpeyqqdldrelfklkqmygkadmntfpn
    ftfedpkfevvekpqs
    

    Sequence, based on observed residues (ATOM records):
    >6z1uh (h:)
    dpvqklfvdkireyrtkrqtsg