PDB entry 6yz5

View 6yz5 on RCSB PDB site
Description: H11-D4 complex with SARS-CoV-2 RBD
Class: viral protein
Keywords: nanobody, complex, SARS-Cov-2, VIRAL PROTEIN
Deposited on 2020-05-06, released 2020-06-03
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-29, with a file datestamp of 2020-06-29.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: N/A
AEROSPACI score: 0.45 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'E':
    Compound: Spike glycoprotein
    Species: Severe acute respiratory syndrome coronavirus 2 [TaxId:2697049]
    Gene: S, 2
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6yz5e_
  • Chain 'F':
    Compound: Nanobody H11-D4
    Species: LAMA GLAMA [TaxId:9844]
    Database cross-references and differences (RAF-indexed):
    • PDB 6YZ5 (0-End)
    Domains in SCOPe 2.08: d6yz5f_
  • Heterogens: NAG, EDO, ACT, HOH

PDB Chain Sequences:

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >6yz5E (E:)
pnitnlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptklnd
lcftnvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnldskvggny
nylyrlfrksnlkpferdisteiyqagstpcngvegfncyfplqsygfqptngvgyqpyr
vvvlsfellhapatvcgpkkstnkhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >6yz5E (E:)
nlcpfgevfnatrfasvyawnrkrisncvadysvlynsasfstfkcygvsptklndlcft
nvyadsfvirgdevrqiapgqtgkiadynyklpddftgcviawnsnnldskvggnynyly
rlfrksnlkpferdisteiyqagstpcngvegfncyfplqsygfqptngvgyqpyrvvvl
sfellhapatvcgpk

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >6yz5F (F:)
qvqlvesggglmqaggslrlscavsgrtfstaamgwfrqapgkerefvaairwsggsayy
adsvkgrftisrdkakntvylqmnslkyedtavyycartenvrsllsdyatwpydywgqg
tqvtvsskhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >6yz5F (F:)
qvqlvesggglmqaggslrlscavsgrtfstaamgwfrqapgkerefvaairwsggsayy
adsvkgrftisrdkakntvylqmnslkyedtavyycartenvrsllsdyatwpydywgqg
tqvtvss