PDB entry 6yxr

View 6yxr on RCSB PDB site
Description: dunaliella minimal photosystem i
Deposited on 2020-05-03, released 2020-07-01
The last revision was dated 2020-07-15, with a file datestamp of 2020-07-10.
Experiment type: EM
Resolution: 3.4 Å
R-factor: N/A
AEROSPACI score: 0.09 (click here for full SPACI score report)

Chains and heterogens:

  • Chain '1':
    Compound: Chlorophyll a-b binding protein, chloroplastic
    Species: Dunaliella salina [TaxId:3046]
    Database cross-references and differences (RAF-indexed):
    • Uniprot C1K003 (0-196)
      • conflict (172)
  • Chain '2':
    Compound: Lhca2
    Species: Dunaliella salina [TaxId:3046]
    Database cross-references and differences (RAF-indexed):
    • PDB 6YXR (0-207)
  • Chain '3':
    Compound: Chlorophyll a-b binding protein, chloroplastic
    Species: Dunaliella salina [TaxId:3046]
    Database cross-references and differences (RAF-indexed):
  • Chain '4':
    Compound: Lhca4
    Species: Dunaliella salina [TaxId:3046]
    Database cross-references and differences (RAF-indexed):
    • PDB 6YXR (0-210)
  • Chain 'A':
    Compound: photosystem I p700 chlorophyll a apoprotein a1
    Species: Dunaliella salina [TaxId:3046]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: photosystem I p700 chlorophyll a apoprotein a2
    Species: Dunaliella salina [TaxId:3046]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: photosystem I iron-sulfur center
    Species: Dunaliella salina [TaxId:3046]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: PsaD
    Species: Dunaliella salina [TaxId:3046]
    Database cross-references and differences (RAF-indexed):
    • PDB 6YXR (0-140)
  • Chain 'E':
    Compound: PsaE
    Species: Dunaliella salina [TaxId:3046]
    Database cross-references and differences (RAF-indexed):
    • PDB 6YXR (0-63)
  • Chain 'F':
    Compound: PsaF
    Species: Dunaliella salina [TaxId:3046]
    Database cross-references and differences (RAF-indexed):
    • PDB 6YXR (0-162)
  • Chain 'J':
    Compound: Photosystem I reaction center subunit IX
    Species: Dunaliella salina [TaxId:3046]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: LUT, XAT, BCR, CLA, CHL, LHG, LMG, 3PH, CL0, PQN, SF4, DGD

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain '1':
    Sequence; same for both SEQRES and ATOM records:
    >6yxr1 (1:)
    qragnfapgsepkeylndlpgnfnfdplelgkekgtlqryreaelihcrwamlgaagcla
    vevlglgnwydaplwavtgdkptwfgievpfdiatilgvevvamavaeglrndnqdmekr
    lypggafdplgfskdpksfedkklkelkngrlamvaclgfagqhaatgkpilaalgdhls
    spffnnfatngvsvpgv
    

  • Chain '2':
    Sequence; same for both SEQRES and ATOM records:
    >6yxr2 (2:)
    drplwspgseppawldgslagdygfdplhlseepemrkwmvqaelvhcrwamlgvagilf
    tsigakaggnfpdwydagkelqknsdiplgsliftelllfgwvetkrlydlrnpgsqgdg
    sflgitdglkgkengypgglfdpmgmskneasfkeakqkevkngrlamlafvgfiaqhha
    thkspidnlldhvadpfhvtfatngvsi
    

  • Chain '3':
    Sequence; same for both SEQRES and ATOM records:
    >6yxr3 (3:)
    yldgtlpgdygfdplglldptvsngqgaggfvnprwlqyseviharwamlgaagciapei
    lgkagvipaetavdwfrtgvippagvykdfwadpftlffievvaiqfaelkrlqdyknpg
    sqsrqyflgleglfkgsdnpaypggpffnfanfgkteaemkklklneikngrlamlamfg
    ygaqavitgdgpfdnllahladptganlit
    

  • Chain '4':
    Sequence; same for both SEQRES and ATOM records:
    >6yxr4 (4:)
    drplwypgatppahldgsmlgdygfdplrlgtnpdrmkwfreaeltngrwamaavvgilf
    tdvftsiglvglpkwweagaqtypidnqtlrtlaiiefllfgwvetkrlydlrnpgsqgd
    gsflgitdglkgtengypggifdplgysktspekldelqngrlamlaflgfastaavngq
    gpieslqthladpfhvtfatngvsiphftef
    

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records:
    >6yxrA (A:)
    vkiavdrnpvetnfekwakpghfsralakgpntttwiwnlhadahdfdnhtsdleeisrk
    vfsahfgqlgiiliwlsgmyfhgarfsnyegwlsdpthikpsaqvvwpivgqeilngdvg
    ggfqgiqitsgffqlwrasgitselqlystaigglvlaaacffagwfhyhkaapklewfq
    nvesmlnhhlagllglgslawaghqihvslpvnklldagvdpkeiplphefllnqsiiad
    lypsfskglapfftlnwaeysdfltfkgglnpvtgglwlsdtahhhlaiavlflvaghqy
    rtnwgighsikdileshkgpftgnghaglyeilttswhaqlainlalfgslsiivahhmy
    amppypylatdygtqlslfthhmwiggfcvvgagahaaifmvrdydptnnynnlldrvir
    hrdaiishlnwvsiflgfhsfglyihndtmsalgrpqdmfsdtaiqlqpvfaqwiqnthf
    tapqltapnalaatsltwggdvvavggkvammpialgtsdflvhhihaftihvtvlillk
    gvlfarssrlipdkanlgfrfpcdgpgrggtcqvsawdhvflglfwmynslsivifhfsw
    kmqsdvwgtvtdsgvshitggnfaqsantingwlrdflwaqssqviqsygsalsayglmf
    lgahfvwafslmflfsgrgywqeliesivwahnklrvapsiqpralsitqgravgvahyl
    lggiattwsfflariiavg
    

  • Chain 'B':
    Sequence; same for both SEQRES and ATOM records:
    >6yxrB (B:)
    fpkfsqglaqdpstrriwyglatahdfeshdgmteenlyqkifashfgqlaiiflwtsgn
    lfhvawqgnfeqwvtdpihvrpiahaiwdphfgqpaveaftrggasgpvniatsgvyqww
    ytiglrsnqelyvssvflalvsavflfagwlhlqpnfqpslswfkdaesrlnhhlaglfg
    vsslawtghlvhvaipesrgqhvgwdnflsvlphpqgltpfwsgnwaayaqnpdtashaf
    gtadgsgtailtflggfhpqtqslwlsdmahhhlaiavlfivaghmyrtnfgighrleai
    leahtppagglgaghkglfhtvnnslhfqlglalasvgtitslvaqhmyslppyaylavd
    fttqaslythhqyiagfimcgafahgaiffirdydpeqnkgnvlarvldhkeaiishlsw
    vslflgfhtlglyvhndvvqafgtpekqiliepvfaqwiqaaqgkslygfdlllassssp
    aysagqslwlpgwleainnnqnslfltigpgdflvhhaialglhtttlilvkgaldargs
    klmpdkkdfgysfpcdgpgrggtcdisaydafylavfwmlntigwvtfywhwkhltlwqg
    nvsqfdesstylmgwlrdylwlnssqlingynpfgmnslsvwawtflfghlvyatgfmfl
    iswrgywqelietlvwahektplanlvywkdkpvalsivqarlvglahfsvgyiftyaaf
    liastagrfg
    

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records:
    >6yxrC (C:)
    ahvvkiydtcigctqcvracpldvlemvpwdgckaaqmassprtedcvgckrcetacptd
    flsvrvylgnestrslglay
    

  • Chain 'D':
    Sequence; same for both SEQRES and ATOM records:
    >6yxrD (D:)
    pwkqpeldpdtpspifggstggllrkaqveefyvitwespkeqifemptggaaimrkgpn
    llkfarkeqcmalttqlrskfrqtpcfyrvyadgkvqylhpkdgvypekvnagrvgvnqn
    mrsigknvdpikvvkftgsep
    

  • Chain 'E':
    Sequence; same for both SEQRES and ATOM records:
    >6yxrE (E:)
    eigpkrgslvkvlrpesywynqvgkvvsvdqsgirypvvvrfenqnyagvstnnyaldei
    eevk
    

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records:
    >6yxrF (F:)
    diagltpcseskaynklerkelkvldkrlkqyepgsapylalqatkertenrfktyakqg
    llcgndglphlisdpglalrfnhagevfiptfgflyvagyighvgrqyiilskedakptd
    keiildvplalklafqgwawplasiqelrngsllekdenitvs
    

  • Chain 'J':
    Sequence; same for both SEQRES and ATOM records:
    >6yxrJ (J:)
    mkdfttylstapvvglgwaiftsgllieinrffpdplvfs