PDB entry 6ywc

View 6ywc on RCSB PDB site
Description: de novo designed protein 4e1h_95 in complex with 101f antibody
Deposited on 2020-04-29, released 2020-10-07
The last revision was dated 2021-04-07, with a file datestamp of 2021-04-02.
Experiment type: XRAY
Resolution: 2.85 Å
R-factor: N/A
AEROSPACI score: 0.2 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Antibody 101F, Heavy Chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6YWC
  • Chain 'B':
    Compound: Antibody 101F, light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6YWC
  • Chain 'C':
    Compound: De novo design 4E1H_95
    Species: synthetic construct, synthetic [TaxId:32630]
    Database cross-references and differences (RAF-indexed):
    • PDB 6YWC
  • Chain 'D':
    Compound: Antibody 101F, Heavy Chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6YWC
  • Chain 'E':
    Compound: Antibody 101F, light chain
    Species: Homo sapiens [TaxId:9606]
    Database cross-references and differences (RAF-indexed):
    • PDB 6YWC
  • Chain 'F':
    Compound: De novo design 4E1H_95
    Species: synthetic construct, synthetic [TaxId:32630]
    Database cross-references and differences (RAF-indexed):
    • PDB 6YWC
  • Heterogens: HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6ywcA (A:)
mgcvaetgeftrqvtlkesgpgilqpsqtlsltcsfsgfslstsgmgvswirqpsgkgle
wlahiywdddkrynpslksrltiskdtsrnqvflkitsvdtadtatyycarlygftygfa
ywgqgtlvtvssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgalts
gvhtfpavlqssglyslssvvtvpssslgtetyicnvnhkpsntkvdkkvepkscdgtkh
hhhhh

    Sequence, based on observed residues (ATOM records):
    >6ywcA (A:)
qvtlkesgpgilqpsqtlsltcsfsgfslstsgmgvswirqpsgkglewlahiywdddkr
ynpslksrltiskdtsrnqvflkitsvdtadtatyycarlygftygfaywgqgtlvtvss
astkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqss
glyslssvvtvpssslgtetyicnvnhkpsntkvdkkvepk

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6ywcB (B:)
mgcvaetgtrdivltqspaslavslgqratifcrasqsvdyngisymhwfqqkpgqppkl
liyaasnpesgiparftgsgsgtdftlnihpveeedaatyycqqiiedpwtfgggtklei
krtvaapsvfifppsdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteq
dskdstyslsstltlskadyekhkvyacevthqglsspvtksfnrgecgtkhhhhhh

    Sequence, based on observed residues (ATOM records):
    >6ywcB (B:)
rdivltqspaslavslgqratifcrasqsvdyngisymhwfqqkpgqppklliyaasnpe
sgiparftgsgsgtdftlnihpveeedaatyycqqiiedpwtfgggtkleikrtvaapsv
fifppsdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstysl
sstltlskadyekhkvyacevthqglsspvtksfnrge

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6ywcC (C:)
mkyfdctvsgergiiktygiqlpeealkehvreyveklregsaititctagdrvfkfkdk
vgswgshhhhhh

    Sequence, based on observed residues (ATOM records):
    >6ywcC (C:)
kyfdctvsgergiiktygiqlpeealkehvreyveklregsaititctagdrvfkfkd

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6ywcD (D:)
mgcvaetgeftrqvtlkesgpgilqpsqtlsltcsfsgfslstsgmgvswirqpsgkgle
wlahiywdddkrynpslksrltiskdtsrnqvflkitsvdtadtatyycarlygftygfa
ywgqgtlvtvssastkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgalts
gvhtfpavlqssglyslssvvtvpssslgtetyicnvnhkpsntkvdkkvepkscdgtkh
hhhhh

    Sequence, based on observed residues (ATOM records):
    >6ywcD (D:)
qvtlkesgpgilqpsqtlsltcsfsgfslstsgmgvswirqpsgkglewlahiywdddkr
ynpslksrltiskdtsrnqvflkitsvdtadtatyycarlygftygfaywgqgtlvtvss
astkgpsvfplapsskstsggtaalgclvkdyfpepvtvswnsgaltsgvhtfpavlqss
glyslssvvtvpssslgtetyicnvnhkpsntkvdkkvepk

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6ywcE (E:)
mgcvaetgtrdivltqspaslavslgqratifcrasqsvdyngisymhwfqqkpgqppkl
liyaasnpesgiparftgsgsgtdftlnihpveeedaatyycqqiiedpwtfgggtklei
krtvaapsvfifppsdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteq
dskdstyslsstltlskadyekhkvyacevthqglsspvtksfnrgecgtkhhhhhh

    Sequence, based on observed residues (ATOM records):
    >6ywcE (E:)
divltqspaslavslgqratifcrasqsvdyngisymhwfqqkpgqppklliyaasnpes
giparftgsgsgtdftlnihpveeedaatyycqqiiedpwtfgggtkleikrtvaapsvf
ifppsdeqlksgtasvvcllnnfypreakvqwkvdnalqsgnsqesvteqdskdstysls
stltlskadyekhkvyacevthqglsspvtksfnrgec

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6ywcF (F:)
mkyfdctvsgergiiktygiqlpeealkehvreyveklregsaititctagdrvfkfkdk
vgswgshhhhhh

    Sequence, based on observed residues (ATOM records):
    >6ywcF (F:)
kyfdctvsgergiiktygiqlpeealkehvreyveklregsaititctagdrvfkfkd