PDB entry 6yvu

View 6yvu on RCSB PDB site
Description: condensin complex from s.cerevisiae atp-free apo non-engaged state
Deposited on 2020-04-28, released 2020-07-15
The last revision was dated 2020-08-19, with a file datestamp of 2020-08-14.
Experiment type: EM
Resolution: 7.5 Å
R-factor: N/A
AEROSPACI score: -0 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Structural maintenance of chromosomes protein 2,Structural maintenance of chromosomes protein 2,Smc2
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: SMC2, YFR031C
    Database cross-references and differences (RAF-indexed):
    • Uniprot P38989 (0-End)
    • PDB 6YVU (1170-1177)
  • Chain 'B':
    Compound: Structural maintenance of chromosomes protein 4
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: SMC4, YLR086W, L9449.5
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Condensin complex subunit 2,Condensin complex subunit 2,Brn1
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: BRN1, YBL097W, YBL0830
    Database cross-references and differences (RAF-indexed):
    • Uniprot P38170
    • PDB 6YVU (754-772)
  • Chain 'D':
    Compound: Condensin complex subunit 1,Condensin complex subunit 1,Ycs4
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: YCS4, LOC7, YLR272C, L8479.14
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q06156
    • PDB 6YVU (1176-1184)

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6yvuA (A:)
    mkveeliidgfksyatrtvitdwdpqfnaitglngsgksnildaicfvlgiasmstvras
    slqdliykrgqagvtkasvtivfdntdksnspigftnspqisvtrqvvlggtskylingh
    rapqqsvlqlfqsvqlninnpnflimqgkitkvlnmkpseilslieeaagtkmfedrrek
    aertmskketklqenrtllteeiepkleklrnekrmflefqstqtdlekterivvsyeyy
    nikhkhtsiretlengetrmkmlnefvkktseeidslnedveeiklqkekelhkegtisk
    lenkengllneisrlktslsikvenlndttekskaleseiasssakliekksayantekd
    ykmvqeqlskqrdlykrkeelvstlttgisstgaadggynaqlakaktelnevslaikks
    smkmellkkelltiepklkeatkdnelnvkhvkqcqetcdklrarlveygfdpsrikdlk
    qredklkshyyqtcknseylkrrvtnlefnytkpypnfeasfvhgvvgqlfqidndniry
    atalqtcaggrlfnvvvqdsqtatqllergrlrkrvtiipldkiytrpissqvldlakki
    apgkvelainlirfdesitkamefifgnslicedpetakkitfhpkirarsitlqgdvyd
    pegtlsggsrntsesllvdiqkynqiqkqietiqadlnhvteelqtqyatsqktktiqsd
    lnlslhkldlakrnldanpssqiiarneeilrdigeceneiktkqmslkkcqeevstiek
    dmkeydsdkgsklnelkkelkllakeleeqeseserkydlfqnleleteqlsseldsnkt
    llhnhlksieslklensdlegkirgveddlvtvqtelneekkrlmdiddelneletlikk
    kqdekksselelqklvhdlnkyksntnnmekiiedlrqkhefledfdlvrnivkqnegid
    ldtyrerskqlnekfqelrkkvnpnimnmienvekkeaalktmiktiekdkmkiqetisk
    lneykretlvktwekvtldfgnifadllpnsfaklvpcegkdvtqglevkvklgniwkes
    lielsggqrslialslimallqfrpapmyildevdaaldlshtqnighliktrfkgsqfi
    vvslkegmfananrvfrtrfqdgtsvvsimxxxxxxxx
    

    Sequence, based on observed residues (ATOM records):
    >6yvuA (A:)
    mkveeliidgfksyatrtvitdwdpqfnaitglngsgksnildaicfvlgiasmstvras
    slqdliykrgqagvtkasvtivfdntdksnspigftnspqisvtrqgtskylinghrapq
    qsvlqlfqsvqlninnpnflimqgkitkvlnmkpseilslieeaagtkmfedrrekaert
    mskketklqenrtllteeiepkleklrnekrmflefqstqtdlekterivvsyeyynikh
    khtsiretlengetrmkmlnefvkktseeidslnedveeiklqkekelhksklenkengl
    lneisrlktslsikvenlndttekskaleseiasssakliekksayantekdykmvqeql
    skqrdlykrkeelvstladggynaqlakaktelnevslaikkssmkmellkkelltiepk
    lkeatkdnelnvkhvkqcqetcdklrarlveygfdpsrikdlkqredklkshyyqtckns
    eylkrrvtnlefnytkpypnfeasfvhgvvgqlfqidndniryatalqtcaggrlfnvvv
    qdsqtatqllergrlrkrvtiipldkiytrpissqvldlakkiapgkvelainlirfdes
    itkamefifgnslicedpetakkitfhpkirarsitlqgdvydpegtlsggsresllvdi
    qkynqiqkqietiqadlnhvteelqtqyatsqktktiqsdlnlslhkldlakrnldanps
    sqiiarneeilrdigeceneiktkqmslkkcqeevstiekdmkeydssklnelkkelkll
    akeleeqeseserkydlfqnleleteqlsseldsnktllhnhlksieslklensdlegki
    rgveddlvtvqtelneekkrlmdiddelneletlikkkqdekksselelqklvhdlnkyk
    sntnnmekiiedldtyrerskqlnekfqelrkkvnpnimnmienvekkeaalktmiktie
    kdkmkiqetisklneykretlvktwekvtldfgnifadllpnsfaklvpcegkdvtqgle
    vkvklgniwkeslielsggqrslialslimallqfrpapmyildevdaaldlshtqnigh
    liktrfkgsqfivvslkegmfananrvfrtrfqdgtsvvxxxxxxxx
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6yvuB (B:)
    msdsplskrqkrksaqepelsldqgdaeedsqvenrvnlsentpepdlpaleasysksyt
    prklvlssgenryafsqptnstttslhvpnlqppktssrgrdhksysqspprspgrsptr
    rlellqlspvknsrvelqkiydrhqssskqqsrlfinelvlenfksyagkqvvgpfhtsf
    savvgpngsgksnvidsmlfvfgfrankmrqdrlsdlihkseafpslqscsvavhfqyvi
    dessgtsrideekpgliitrkafknnsskyyinekessytevtkllknegidldhkrfli
    lqgeveniaqmkpkaekesddglleylediigtanykplieermgqienlnevclekenr
    feivdreknslesgketaleflekekqltllrsklfqfkllqsnsklastlekisssnkd
    ledekmkfqeslkkvdeikaqrkeikdrisscsskektlvlerrelegtrvsleertknl
    vskmekaektlkstkhsiseaenmleelrgqqteheteikdltqllekersilddiklsl
    kdktknisaeiirhekelepwdlqlqekesqiqlaeselslleetqaklkknvetleeki
    lakkthkqelqdlildlkkklnslkdersqgeknftsahlklkemqkvlnahrqramear
    sslskaqnkskvltalsrlqksgringfhgrlgdlgviddsfdvaistacprlddvvvdt
    vecaqhcidylrknklgyarfilldrlrqfnlqpistpenvprlfdlvkpknpkfsnafy
    svlrdtlvaqnlkqannvaygkkrfrvvtvdgklidisgtmsgggnhvakglmklgtnqs
    dkvddytpeevdkierelserennfrvasdtvhemeeelkklrdhepdlesqiskaemea
    dslaseltlaeqqvkeaemayvkavsdkaqlnvvmknlerlrgeyndlqsetktkkekik
    glqdeimkiggiklqmqnskvesvcqkldilvaklkkvksaskksggdvvkfqkllqnse
    rdvelssdelkvieeqlkhtklalaendtnmnetlnlkvelkeqseqlkeqmedmeesin
    efksieiemknkleklnslltyikseitqqekglnelsirdvthtlgmlddnkmdsvked
    vknnqeldqeyrscetqdeseikdaetscdnyhpmnidetsdevsrgiprlsedelreld
    velieskinelsyyveetnvdigvleeyarrlaefkrrkldlnnavqkrdevkeqlgilk
    kkrfdefmagfniismtlkemyqmitmggnaelelvdsldpfsegvtfsvmppkkswrni
    tnlsggektlsslalvfalhkykptplyvmdeidaaldfrnvsivanyikertknaqfiv
    islrnnmfelaqqlvgvykrdnrtksttiknidilnrt
    

    Sequence, based on observed residues (ATOM records):
    >6yvuB (B:)
    qsrlfinelvlenfksyagkqvvgpfhtsfsavvgpngsgksnvidsmlfvfgfrankmr
    qdrlsdlihkseafpslqscsvavhfqyvidessgtsrideekpgliitrkafknnssky
    yinekessytevtkllknegidldhkrflilqgeveniaqmkpkaekesddglleyledi
    igtanykplieermgqienlnevclekenrfeivdreknslesgketaleflekekqltl
    lrsklfqfkllqsnsklastlekisssnkdledekmkfqeslkkvdeikaqrkeikdris
    scsskektlvlerrelegtrvsleertknlvskmekaektlkstkhsiseaenmleelrg
    qqteheteikdltqllekersilddiklslkdktknisaeiirhekelepwdlqlqekes
    qiqlaeselslleetqaklkknvetleekilakkthkqelqdlildlkkklnslkdersq
    geknftsahlklkemqkvlnahrqramearsslskaqnkskvltalsrlqksgringfhg
    rlgdlgviddsfdvaistacprlddvvvdtvecaqhcidylrknklgyarfilldrlrqf
    nlqpistpenvprlfdlvkpknpkfsnafysvlrdtlvaqnlkqannvaygkkrfrvvtv
    dgklidisgtmsgggnhvakglmklkvddytpeevdkierelserennfrvasdtvheme
    eelkklrdhepdlesqiskaemeadslaseltlaeqqvkeaemayvkavsdkaqlnvvmk
    nlerlrgeyndlqsetktkkekikglqdeimkiiklqmqnskvesvcqkldilvaklkkv
    ksaskksggdvvkfqkllqnserdvelssdelkvieeqlkhtklalaendtnmnetlnlk
    velkeqseqlkeqmedmeesinefksieiemknkleklnslltyikseitqqekglesei
    kdaetsclsedelreldvelieskinelsyyveetnvdigvleeyarrlaefkrrkldln
    navqkrdevkeqlgilkkkrfdefmagfniismtlkemyqmitmggnaelelvdsldpfs
    egvtfsvmppkkswrnitnlsggektlsslalvfalhkykptplyvmdeidaaldfrnvs
    ivanyikertknaqfivislrnnmfelaqqlvgvykrdnrtksttiknidi
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6yvuC (C:)
    mttqlryennddderveynlftnrstmmanfeewikmatdnkinsrnswnfalidyfydl
    dvlkdgenninfqkasatldgcikiyssrvdsvttetgkllsglaqrktngasngddsng
    gngeglggdsdeanieidpltgmpisndpdvnntrrrvynrvlettlvefetikmkeldq
    eliidplfkkalvdfdeggakslllntlnidntarvifdasikdtqnvgqgklqrkeeel
    ierdslvddenepsqslistrndstvndsvisapsmedeilslgmdfikfdqiavceisg
    sieqlrnvvedinqakdfienvnnrfdnflteeelqaavpdnaeddsdgfdmgmqqelcy
    pdenhdntshdeqdddnvnsttgsifekdlmayfdenlnrnwrgrehwkvrnfkkanlvn
    kesdlleetrttigdttdknttddksmdtkkkhkqkkvleidffktddsfedkvfaskgr
    tkidmpiknrkndthyllpddfhfstdritrlfikpgqkmslfshrkhtrgdvssglfek
    stvsanhsnndiptiadehfwadnyerkeqeekekeqskevgdvvggaldnpfeddmdgv
    dfnqafegtddneeasvkldlqddedhkfpirenkvtysrvskkvdvrrlkknvwrsinn
    liqehdsrknreqssndsethtedestkelkfsdiiqgiskmysddtlkdistsfcficl
    lhlanehglqithtenyndlivnyedlattqaasxxxxxxxxxxxxxxxxxxx
    

    Sequence, based on observed residues (ATOM records):
    >6yvuC (C:)
    stmmanfeewikmatdnkinsrnswnfalidyfydldvlkdgenninfqkasatldgcik
    iyssrvdsvttetgkllsglaqrktlvefetikidplfkkalvdfgakslllntlnidnt
    arvifdakkvdvrrlkknvwrsinnliqehdsrestkelkfsdiiqgiskmysddtlkdi
    stsfcficllhlanehglqithtenyndlivnyedlxxxxxxxxxxxxxxxxxxx
    

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6yvuD (D:)
    msgfslseyltkfqttdresyprlqdpsrelnviidqlavspeqidaspdslealidlch
    dfphltpklqtqlsylissslsnlskdikanlssnvnfteigglipqwkrhleeygyliq
    vlltflqdelhkvssqstnlnrsaknskndsanvelfkrdcnqmenllesitklleinls
    kifqttpekdlfiglftrplfvlleiepvtkvsslkmfiqrilamcvknhgqsssiqssl
    mtnltyflhlsvfnaellkllndeynypqltedilkeistrvfnakdttgpkaisnflik
    lselspgimlrqmnlvitllnnssitlrcsvveacgnivaelaqdpqtmehykqqiavli
    elleerfqdsnpyvrtkaiqgcskicdlsskfnkskakftslavrslqdrsslvrrnsvk
    llsklllkhpfkaihgsqlrlseweeylkgsesqlnstlkkvesqetlndtierslieee
    veqdegqcrtelegsfnksaelsrieneveninatntsvlmklklmivyykdaisfikei
    hksielisnllfsknrnevlesmdflvladafdielsefgikkmlhlvwmkgtndegtsi
    svhliecykqlfltapdscnmqekaahiaknlinlsigasiadlasleqllgmmyeqkli
    dqhvinilwaiynsaskasmqkeqnvnnrdsekgfskeqihgsiiilgmlsladneialk
    glesllniglgavglkdltlcrysclalermvpkrstiitkainqeledvavkklyaiii
    nytkdneyypmceqalsalftisskpdilatdlirektmmtfgkpeeedsilsleqssrv
    vslsqllfivgqvaiktlvylekceaefkkrkieaetrngkvknqgadvtnttqdnggdk
    elemiggtneddftdaiqfvkenellfgeksilgkfcpiveeivsnssrfsdpmlqrtat
    lcleklmclsskycekslpllitvmekspdptirsnavlglgdmavcfnnlvdentdyly
    rrlhdenlmvqrtclmtvtflilagqvkvkgqlgemakcldnpdqgisdmcrlfftelas
    kdnaiyngfidifsnlssddllgkesfkkiikflltfidkerhqkqlneklvgrlrkcet
    qkqwddiafvlnnlpyknedvtalleqgfkvvsakexxxxxxxxx
    

    Sequence, based on observed residues (ATOM records):
    >6yvuD (D:)
    slseyltkfrelnviidqspdslealidlchsslsnlskdikanlssnvnfteglipqwk
    rhleeygyliqvlltflqmenllesitklleinpekdlfiglftrplfvllkmfiqrila
    mcvknhgqsssiqsslmtnltyflhlsvfnaellkllndeynypqltedilkeistrvfn
    akdttgpkaisnfliklselspgimlrqmnlvitllnnssitlrcsvveacgnivaelaq
    dpqtmehykqqiavlielleerfqdsnpyvrtkaiqgcskicdlsskfnkskakftslav
    rslqdrsslvrrnsvkllsklllkhpfkaihgsqlrlseweeylkgsesqlnstsvlmkl
    klmivyykdaisfikeihksielisnllfnrnevlesmdflvladafdielsefgikkml
    hlvwisvhliecykqlfltapdscnmqekaahiaknlinlsigasiadlasleqllgmmy
    eqklidqhvinilwaiynsaskgfskeqihgsiiilgmlsladneialkglesllniglg
    avglkdltlcrysclalermvpqeledvavkklyaiiinytkdneyypmceqalsalfti
    sskpdilatdlirektmmvvslsqllfivgqvaiktlvylekceaefkkrkidkelemig
    gtnedftdaiqfvkenmlqrtatlcleklmclsskycekslpllitvmekspdptirsna
    vlglgdmavcvdentdylyrrlhdenlmvqrtclmtvtflilagqgqlgemakcldnpdq
    gisdmcrlfftelasgfidifsnlssddllgkesfkkiikflltfidkerhqkqlneklv
    grlrkcetqkqwddiafxxxxxxxxx