PDB entry 6yuf

View 6yuf on RCSB PDB site
Description: cohesin complex with loader gripping dna
Deposited on 2020-04-27, released 2020-08-19
The last revision was dated 2020-09-30, with a file datestamp of 2020-09-25.
Experiment type: EM
Resolution: 3.94 Å
R-factor: N/A
AEROSPACI score: 0.11 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Structural maintenance of chromosomes protein 1
    Species: Schizosaccharomyces pombe (strain 972 / ATCC 24843) [TaxId:284812]
    Gene: psm1, smc1, SPBC29A10.04
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Cohesin subunit rad21
    Species: Schizosaccharomyces pombe (strain 972 / ATCC 24843) [TaxId:284812]
    Gene: rad21, SPCC338.17c
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: structural maintenance of chromosomes protein 3
    Species: Schizosaccharomyces pombe (strain 972 / ATCC 24843) [TaxId:284812]
    Gene: psm3, smc3, SPAC10F6.09c
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Sister chromatid cohesion protein mis4
    Species: Schizosaccharomyces pombe (strain 972 / ATCC 24843) [TaxId:284812]
    Gene: mis4, SPAC31A2.05c
    Database cross-references and differences (RAF-indexed):
  • Chain 'X':
    Compound: DNA (32-mer)
    Species: synthetic construct, synthetic [TaxId:32630]
  • Chain 'Y':
    Compound: DNA (32-mer)
    Species: synthetic construct, synthetic [TaxId:32630]
  • Heterogens: BEF, ADP

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6yufA (A:)
    mgrllrlevenfksyrghqiigpfedftsiigpngagksnlmdaisfvlgvksshlrstn
    vkeliyrgkilqrdntdftdssnpttayvklmyeldngeqreykraitpsgateykidee
    ivtfseycgslqkenilvrarnflvfqgdvetiasqsplelsklveqisgsleykseydk
    skdeqdkavnlsahsfnkkrginaelrqyqeqkteaeryqsqkekrdsaqlvyllwklfh
    leksissnmaevtrlkadsiqlierrdentkeieklkekegsirrnllafdrkvrkqekl
    iaskrpelisiaekalesksnlrkiqrkaaeiekdysdqastlqvlenqltslsaaekef
    lkdmqekeqlkglrllpedkeeyeglrseadklnsnllfklqtlnrnikvtsqskdslts
    ivgdleskikslhesvssldteradllakinekieslelekhdqqkkrltyselfhktqe
    lneelqsclqkileasadrneskqdakkrealyalkriypevkgriidlctptqkkyesa
    iaaalgknfdaivvetqavakecidyikeqrigimtffpmdtiaaspvnqkfrgthkgar
    laidvlnfeseyervmisavgntlicdsmtvardlsynkrlnaktvtlegtvihktglit
    ggssnnrsakhwddhdfdlltqtkdrlmhqigeieyqksscvitesdtvklhsleseisl
    lkdkytvvsrsvedkkkeighyeslikekqphlselemelrnfvksrdelqiqvekveek
    ifsgfckrigisdihtydeihrtftqsftqkqleftkqksllenrisfekqrvsdtrlrl
    ermhkfiekdqesidnyeqnrealesevataeaelellkedfasensktekillaasekk
    lvgkrlvseltklsgnitlleseidryvsewhailrkckledidvplregsltsipiddv
    snsgditmgeepsepvinfekfgvevdydeldeelrndgsesmasvlqeklreyseeldq
    mspnlraierletvetrlakldeefaaarkaaknakerfnavkqkrlqkfqaafshiseq
    idpiykeltkspafplggtayltlddldepylggikfhamppmkrfrdmdqlsggektma
    alallfaihsyqpspffvldeidaaldqtnvtkianyirqhassgfqfvvislknqlfsk
    sealvgiyrdqqenssrtlsinlegyve
    

    Sequence, based on observed residues (ATOM records):
    >6yufA (A:)
    grllrlevenfksyrghqiigpfedftsiigpngagksnlmdaisfvlgvksshlrstnv
    kelipttayvklmyeldngeqreykraitpsgateykideeivtfseycgslqkenilvr
    arnflvfqgdvetiasqsplelsklveqisgsleykseydkskdeqdkavnlsahsfnkk
    rginaelrletvetrlakldeefaaarkaaknakerfnavkqkrlqkfqaafshiseqid
    piykeltkspafplggtayltlddldepylggikfhamppmkrfrdmdqlsggektmaal
    allfaihsyqpspffvldeidaaldqtnvtkianyirqhassgfqfvvislknqlfskse
    alvgiyrdqqenssrtlsinlegy
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6yufB (B:)
    mfyseailskkgplakvwlaahwekklskvqtlhtsieqsvhaivteetapmalrlsgql
    mlgvvriysrkarylledctealmrlkmsfqpgqvdmiepatalqslkgkdavtqsanlt
    lpetitefdllvpdstfdfqwsqllrtpsrssntlelhslpissspsfpssqlsieagrn
    aqvesgfslgesfahvgndmqfhlpisnsgaatprsvhsdnqsqisievgrdapaaaatd
    lsgiigpqmtkspassvthfstpsmlpiggtslddellapvddlnldlglddllgdeqga
    napaieadeqaetssihlpsdimeddssrpaaagveegqvvesatapqqekinpqktvrr
    qraiidpvtelsskqmkkqladtssitsplclntssivfnatvnftrngkfntsifssnl
    npkvnellqadfkqailrkrknespeevepakhqrtdtstenqetaevldpeeiaaaela
    niteaaiatlpqetvvqpegeapelgspmgfpvtalesaddslfdappvmldeadllgse
    rldssvsealpssqtakdslrnkwdpytegekvsfqtlsagcnreeavqlffdvlvlatk
    dvisvkqdvaiqneitltakrgmllssl
    

    Sequence, based on observed residues (ATOM records):
    >6yufB (B:)
    eailskkgplakvwlaahwekklskvqtlhtsieqsvhaivteetapmalrlsgqlmlgv
    vriysrkarylledctealmrlkmssqtakdslrnkwdpytegekvsfqtlsagcnreea
    vqlffdvlvlatkdvisvkqdvaiqneitlta
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6yufC (C:)
    myitkiviqgfksykdytvieplsphhnvivgrngsgksnffaairfvlsdaythlsree
    rqallhegpgatvmsayvevtfanadnrfptgksevvlrrtiglkkdeysldkktvskte
    vinllesagfsrsnpyyivpqgrvtsltnakdserlellkevagtqiyenrraesnkimd
    etiqksekidellqyieerlreleeekndlavyhkkdnerrcleyaiysrehdeinsvld
    aleqdriaalerndddsgafiqreerierikaeitelnhslellrvekqqndedytnimk
    skvalelqssqlsrqiefskkdessklnilseleskisekenelseilpkynaivseadd
    lnkrimllknqkqslldkqsrtsqfttkkerdewirnqllqinrninstkensdylktey
    demenelkaklsrkkeieislesqgdrmsqllanitsinerkenltdkrkslwreeaklk
    ssienvkddlsrsekalgttmdrntsngiravkdiaerlklegyygplcelfkvdnrfkv
    aveatagnslfhivvdndetatqildviykenagrvtfmplnklrpkavtypdasdalpl
    iqylefdpkfdaaikqvfsktivcpsietasqyarshqlngitlsgdrsdkkgaltagyr
    dyrnsrldaiknvktyqikfsdlqeslekcrseiesfdqkitaclddlqkaqlslkqfer
    dhiplkdelvtitgettdlqesmhhksrmlelvvlelhtleqqandlkselssemdeldp
    kdvealkslsgqienlshefdaiikerahiearktaleyelntnlylrrnplkaeigsdn
    rideselnsvkrsllkyenklqiikssssgleeqmqrinseisdkrnelesleelqheva
    trieqdakinernaakrslllarkkecnekikslgvlpeeafikyvstssnaivkklhki
    nealkdygsvnkkayeqfnnftkqrdsllarreelrrsqesiselttvldqrkdeaiert
    fkqvaksfseifvklvpagrgelvmnrrselsqsieqdismdidtpsqkssidnytgisi
    rvsfnskddeqlninqlsggqkslcaltlifaiqrcdpapfnildecdanldaqyrsaia
    amvkemsktsqficttfrpemvkvadnfygvmfnhkvstvesiskeeamafveg
    

    Sequence, based on observed residues (ATOM records):
    >6yufC (C:)
    yitkiviqgfksykdytvieplsphhnvivgrngsgksnffaairfvlsdaythlsreer
    qallhegpgatvmsayvevtfanadnrfptgksevvlrrtiglkkdeysldkktvsktev
    inllesagfsrsnpyyivpqgrvtsltnakdserlellkevagtqiyenrraesnkimde
    tiqksekidellqyieerlreleeekndlavyhkkdnerrcleyaiysrehdeinsvlds
    snaivkklhkinealkdygsvnkkayeqfnnftkqrdsllarreelrrsqesiselttvl
    dqrkdeaiertfkqvaksfseifvklvpagrgelvmnrrsisirvsfnskddeqlninql
    sggqkslcaltlifaiqrcdpapfnildecdanldaqyrsaiaamvkemsktsqficttf
    rpemvkvadnfygvmfnhkvstvesiskeeamafve
    

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6yufD (D:)
    mlfemtpetfkkvnssnriikglqytplassiplenglqnvlypsskfqneplqlnsees
    simqryvdmlnpgatfvndsetfnfyknalsamitepampamrvnaspvldqkvcnsdsl
    selndftksliqpsmlmcepkekpdassintnrsssdngfltpsssprspscsrvfnavq
    lcspkkskddittpkkrlmedtysprespskiqrlqdvllkqlqdtrllisqvieaense
    dfssnslfikredddgkhisshaieklymaltklsrlgacdklleegsiilvkqilekel
    kelpvacysiinlhdsltqfpnldfilkttalvlfiiflvpsfkklqneesilhllnilh
    sifeytvpeaidnivqsktsdartseiqhlsvllqkvanvlnilskvaheiplseavvir
    ivylfpkvstldnsfktklpncnsssfdflkaplfqtlqylfrlypyqrdfiieesltnf
    shlptarsvsrtyrlsngksiqyystlfvrliqscsiqnlfdseivqseskstealhsgn
    ltehlktvesilsksrheeyrianhivayllsrslkqnktesdnsfailtkilledllnm
    lslpewcgtetiirqfamnlvmtvtndkqavssknaaldlislivnkvlalfdlslfekh
    nipaptnfndiisfipsitrlnelsqvsfnhfyflckgdislenilpynynkwfsfllql
    rkvcndsealkiidncidknmqksqegfqgpspfkadendedifiislyhsslflnlkff
    vsliigfldspqaslrtkclriinqmktipsilrthpevlaqiisksndqsaivrdtvld
    llgtyimayretipqiygciisgisdpstivrkraikqlcevyeatedlnirvdiaskll
    trsndeeetiselslevleklwfspasneldcqkgyeqltflekqklrvqyfpilklcae
    psterhvllvtslktmltskeeinlstlhtqirlllsclfnqlievvtedqvdestkgil
    yeimstlfvfsrafpflfdlsylhllkpylrsastieeqrflyyvvaifrqvlpfqkeis
    esflrslesvllqrltkagtatlmeivpclcslftrlndyerlkkivvsclksleearhs
    ennfqkmvrlidliglfsrygdlnrinddwkhsldfispecddayvillgyfqkllkdak
    gqlrihiidnmsriclretslfisplmlstldmiiaennvnevsvlfksflellaadedl
    ifeadqklslkgkqnvqsnksvdrdmlkgtkdkqwiegvsaslmqhflpcildscfsknl
    rysmlgieilkciihqglvnprmcfstiialesnaiketrevaillhtelhrrheslidg
    lyaqsadlifslqkteeyqtfklgefspfqsaytivsadkssksrkklimqilkplkldg
    idlpsfteekvsfvsfccvclagipyvsieeplmiistvdsvlatigptitgwmkkldhe
    rfkilaginlcnliylkryikyafsisdssrpirekkpltllnrgyvdlitsdakpdivs
    klviklfeeenilsgedqvegeqltvv
    

    Sequence, based on observed residues (ATOM records):
    >6yufD (D:)
    pskiqrlqdvllkqlqdtrllisqvieaensedfssnslfikredddgkhisshaiekly
    maltklsrlgacdklleegsiilvkqilekelkefpnldfilkttalvlfiiflvpsfkk
    lqneesilhllnilhsifeytvpeaidnivqsktsdartseiqhlsvllqkvanvlnils
    kvaheiplseavvirivylfpkvstldnsfktklpncnsssfdflkaplfqtlqylfrly
    pyqrdfiieesltnfshlptarsvsrtyrlsngksiqyystlfvrliqscsiqnlfdsei
    vqseskstealhsgnltehlktvesilsksrheeyrianhivayllsrslkqnktesdns
    failtkilledllnmlslpewcgtetiirqfamnlvmtvtndkqavssknaaldlisliv
    nkvlalfdlslfekhnipaptnfndiisfipsitrlnelsqvsfnhfyflckgdisleni
    lpynynkwfsfllqlrkvcndsealkiidncidknmqksqegfndedifiislyhsslfl
    nlkffvsliigfldspqaslrtkclriinqmktipsilrthpevlaqiisksndqsaivr
    dtvldllgtyimayretipqiygciisgisdpstivrkraikqlcevyeatedlnirvdi
    asklltrsndeeetiselslevleklwfspasneldcqkgyeqltflekqklrvqyfpil
    klcaepsterhvllvtslktmltskeeinlstlhtqirlllsclfnqlievvtetkgily
    eimstlfvfsrafpflfdlsylhllkpylrsastieeqrflyyvvaifrqvlpfqkeise
    sflrslesvllqrltkagtatlmeivpclcslftrlndyerlkkivvsclksleearhse
    nnfqkmvrlidliglfsrygdlnrinddwkhsldfispecddayvillgyfqkllkdakg
    qlrihiidnmsriclretslfisplmlstldmiiaennvnevsvlfksflellaadedli
    feadqklslkgkqnvkqwiegvsaslmqhflpcildscfsknlrysmlgieilkciihqg
    lvnprmcfstiialesnaiketrevaillhtelhrrheslidglyaqsadlifslqktee
    yqtfklgefspfqsaytivsadkssksrkklimqilkplkldgidlpsfteekvsfvsfc
    cvclagipyvsieeplmiistvdsvlatigptitgwmkkldherfkilaginlcnliylk
    ryikyafsisds
    

  • Chain 'X':
    No sequence available.

  • Chain 'Y':
    No sequence available.