PDB entry 6yrj

View 6yrj on RCSB PDB site
Description: SFX structure of dye-type peroxidase DtpB in the ferric state
Class: oxidoreductase
Keywords: peroxidase; dye-decolourising; serial femtosecond crystallography; damage-free; ferric, OXIDOREDUCTASE
Deposited on 2020-04-20, released 2021-01-13
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-01-20, with a file datestamp of 2021-01-15.
Experiment type: XRAY
Resolution: 1.85 Å
R-factor: N/A
AEROSPACI score: 0.44 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Putative iron-dependent peroxidase
    Species: Streptomyces lividans 1326 [TaxId:1200984]
    Gene: SAMN05428941_7146
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6yrja_
  • Chain 'B':
    Compound: Putative iron-dependent peroxidase
    Species: Streptomyces lividans 1326 [TaxId:1200984]
    Gene: SAMN05428941_7146
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6yrjb_
  • Chain 'C':
    Compound: Putative iron-dependent peroxidase
    Species: Streptomyces lividans 1326 [TaxId:1200984]
    Gene: SAMN05428941_7146
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6yrjc_
  • Chain 'D':
    Compound: Putative iron-dependent peroxidase
    Species: Streptomyces lividans 1326 [TaxId:1200984]
    Gene: SAMN05428941_7146
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6yrjd_
  • Chain 'E':
    Compound: Putative iron-dependent peroxidase
    Species: Streptomyces lividans 1326 [TaxId:1200984]
    Gene: SAMN05428941_7146
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6yrje_
  • Chain 'F':
    Compound: Putative iron-dependent peroxidase
    Species: Streptomyces lividans 1326 [TaxId:1200984]
    Gene: SAMN05428941_7146
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6yrjf_
  • Heterogens: HEM, MG, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6yrjA (A:)
mggeveepepqmvlspltsaaiflvvtidsggedtvrdllsdvasleravgfraqpdgrl
scvtgigseawdrlfsgarpaglhpfreldgpvhravatpgdllfhirasrldlcfalat
eimgrlrgavtpqdevhgfkyfderdmlgfvdgtenptgaaarravlvgaedpafaggsy
avvqkylhdidaweglsveaqervigrrkmtdvelsddvkpadshvaltsvtgpdgsdle
ilrdnmpfgsvgreefgtyfigyartpevtetmlermflgtasaphdrildfstavtgsl
fftpaadfledlsarp

    Sequence, based on observed residues (ATOM records): (download) 
    >6yrjA (A:)
epepqmvlspltsaaiflvvtidsggedtvrdllsdvasleravgfraqpdgrlscvtgi
gseawdrlfsgarpaglhpfreldgpvhravatpgdllfhirasrldlcfalateimgrl
rgavtpqdevhgfkyfderdmlgfvdgtenptgaaarravlvgaedpafaggsyavvqky
lhdidaweglsveaqervigrrkmtdvelsddvkpadshvaltsvtgpdgsdleilrdnm
pfgsvgreefgtyfigyartpevtetmlermflgtasaphdrildfstavtgslfftpaa
dfledl

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6yrjB (B:)
mggeveepepqmvlspltsaaiflvvtidsggedtvrdllsdvasleravgfraqpdgrl
scvtgigseawdrlfsgarpaglhpfreldgpvhravatpgdllfhirasrldlcfalat
eimgrlrgavtpqdevhgfkyfderdmlgfvdgtenptgaaarravlvgaedpafaggsy
avvqkylhdidaweglsveaqervigrrkmtdvelsddvkpadshvaltsvtgpdgsdle
ilrdnmpfgsvgreefgtyfigyartpevtetmlermflgtasaphdrildfstavtgsl
fftpaadfledlsarp

    Sequence, based on observed residues (ATOM records): (download) 
    >6yrjB (B:)
epepqmvlspltsaaiflvvtidsggedtvrdllsdvasleravgfraqpdgrlscvtgi
gseawdrlfsgarpaglhpfreldgpvhravatpgdllfhirasrldlcfalateimgrl
rgavtpqdevhgfkyfderdmlgfvdgtenptgaaarravlvgaedpafaggsyavvqky
lhdidaweglsveaqervigrrkmtdvelsddvkpadshvaltsvtgpdgsdleilrdnm
pfgsvgreefgtyfigyartpevtetmlermflgtasaphdrildfstavtgslfftpaa
dfledl

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6yrjC (C:)
mggeveepepqmvlspltsaaiflvvtidsggedtvrdllsdvasleravgfraqpdgrl
scvtgigseawdrlfsgarpaglhpfreldgpvhravatpgdllfhirasrldlcfalat
eimgrlrgavtpqdevhgfkyfderdmlgfvdgtenptgaaarravlvgaedpafaggsy
avvqkylhdidaweglsveaqervigrrkmtdvelsddvkpadshvaltsvtgpdgsdle
ilrdnmpfgsvgreefgtyfigyartpevtetmlermflgtasaphdrildfstavtgsl
fftpaadfledlsarp

    Sequence, based on observed residues (ATOM records): (download) 
    >6yrjC (C:)
epepqmvlspltsaaiflvvtidsggedtvrdllsdvasleravgfraqpdgrlscvtgi
gseawdrlfsgarpaglhpfreldgpvhravatpgdllfhirasrldlcfalateimgrl
rgavtpqdevhgfkyfderdmlgfvdgtenptgaaarravlvgaedpafaggsyavvqky
lhdidaweglsveaqervigrrkmtdvelsddvkpadshvaltsvtgpdgsdleilrdnm
pfgsvgreefgtyfigyartpevtetmlermflgtasaphdrildfstavtgslfftpaa
dfledl

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6yrjD (D:)
mggeveepepqmvlspltsaaiflvvtidsggedtvrdllsdvasleravgfraqpdgrl
scvtgigseawdrlfsgarpaglhpfreldgpvhravatpgdllfhirasrldlcfalat
eimgrlrgavtpqdevhgfkyfderdmlgfvdgtenptgaaarravlvgaedpafaggsy
avvqkylhdidaweglsveaqervigrrkmtdvelsddvkpadshvaltsvtgpdgsdle
ilrdnmpfgsvgreefgtyfigyartpevtetmlermflgtasaphdrildfstavtgsl
fftpaadfledlsarp

    Sequence, based on observed residues (ATOM records): (download) 
    >6yrjD (D:)
pepqmvlspltsaaiflvvtidsggedtvrdllsdvasleravgfraqpdgrlscvtgig
seawdrlfsgarpaglhpfreldgpvhravatpgdllfhirasrldlcfalateimgrlr
gavtpqdevhgfkyfderdmlgfvdgtenptgaaarravlvgaedpafaggsyavvqkyl
hdidaweglsveaqervigrrkmtdvelsddvkpadshvaltsvtgpdgsdleilrdnmp
fgsvgreefgtyfigyartpevtetmlermflgtasaphdrildfstavtgslfftpaad
fled

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >6yrjE (E:)
mggeveepepqmvlspltsaaiflvvtidsggedtvrdllsdvasleravgfraqpdgrl
scvtgigseawdrlfsgarpaglhpfreldgpvhravatpgdllfhirasrldlcfalat
eimgrlrgavtpqdevhgfkyfderdmlgfvdgtenptgaaarravlvgaedpafaggsy
avvqkylhdidaweglsveaqervigrrkmtdvelsddvkpadshvaltsvtgpdgsdle
ilrdnmpfgsvgreefgtyfigyartpevtetmlermflgtasaphdrildfstavtgsl
fftpaadfledlsarp

    Sequence, based on observed residues (ATOM records): (download) 
    >6yrjE (E:)
pepqmvlspltsaaiflvvtidsggedtvrdllsdvasleravgfraqpdgrlscvtgig
seawdrlfsgarpaglhpfreldgpvhravatpgdllfhirasrldlcfalateimgrlr
gavtpqdevhgfkyfderdmlgfvdgtenptgaaarravlvgaedpafaggsyavvqkyl
hdidaweglsveaqervigrrkmtdvelsddvkpadshvaltsvtgpdgsdleilrdnmp
fgsvgreefgtyfigyartpevtetmlermflgtasaphdrildfstavtgslfftpaad
fledl

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >6yrjF (F:)
mggeveepepqmvlspltsaaiflvvtidsggedtvrdllsdvasleravgfraqpdgrl
scvtgigseawdrlfsgarpaglhpfreldgpvhravatpgdllfhirasrldlcfalat
eimgrlrgavtpqdevhgfkyfderdmlgfvdgtenptgaaarravlvgaedpafaggsy
avvqkylhdidaweglsveaqervigrrkmtdvelsddvkpadshvaltsvtgpdgsdle
ilrdnmpfgsvgreefgtyfigyartpevtetmlermflgtasaphdrildfstavtgsl
fftpaadfledlsarp

    Sequence, based on observed residues (ATOM records): (download) 
    >6yrjF (F:)
pepqmvlspltsaaiflvvtidsggedtvrdllsdvasleravgfraqpdgrlscvtgig
seawdrlfsgarpaglhpfreldgpvhravatpgdllfhirasrldlcfalateimgrlr
gavtpqdevhgfkyfderdmlgfvdgtenptgaaarravlvgaedpafaggsyavvqkyl
hdidaweglsveaqervigrrkmtdvelsddvkpadshvaltsvtgpdgsdleilrdnmp
fgsvgreefgtyfigyartpevtetmlermflgtasaphdrildfstavtgslfftpaad
fledls