PDB entry 6yrg

View 6yrg on RCSB PDB site
Description: vip3bc1 tetramer in processed, activated state
Deposited on 2020-04-20, released 2021-03-17
The last revision was dated 2021-05-26, with a file datestamp of 2021-05-21.
Experiment type: EM
Resolution: 7 Å
R-factor: N/A
AEROSPACI score: -0.01 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Vegetative insecticidal protein
    Species: BACILLUS THURINGIENSIS [TaxId:1428]
    Gene: vip3Bc1
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Vegetative insecticidal protein
    Species: BACILLUS THURINGIENSIS [TaxId:1428]
    Gene: vip3Bc1
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Vegetative insecticidal protein
    Species: BACILLUS THURINGIENSIS [TaxId:1428]
    Gene: vip3Bc1
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Vegetative insecticidal protein
    Species: BACILLUS THURINGIENSIS [TaxId:1428]
    Gene: vip3Bc1
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6yrgA (A:)
mvqkwmqrmiivdnnklnvralpsfidyfngiygfatgikdimgmifktdtggsnltlde
ilknqnllndisgkldgingdlgdliaqgnlnselakellkisneqnqmlnhvnaqlnai
nstlniylpkitsmlnevmkqnhvlslqieflskqlqeisdkldiinlnvlinstlteit
payqrikyvnekfdeltstveknpksyqdnvtkevienlneltelaksvtkndmdsfefy
lqtfhdvmtgnnlfgrsalktaselitkenvttrgseigkvynflivltslqakafltlt
acrkllgltdidytqimnhhidgqkrefrinilptlsnnfsnpsysknrgsdiddpivvl
eaapgyaligfeilndplpilkgyqarlkpnyqvdresmsetiygdihklfcpkqleqky
yikdiefpegyvitkivfekrlnqlgyevtanfydpstgsidlnkvkveswkeksceeds
cedeysiikaetdgiymplgvvsetfltpiygfgltvdeknqkitltgksylreslletd
llnnetyliaspdgyissivenwnitsdntgswrannnnafvdkadtikgssslythkdg
efsqfignklkpktnyviqyvikgrpaiylknnkdtlfedtknnfsdfqtvtkkfnsgvn
pseiyflfknqseyeawgnnfiileiksleflpqmlkpedwipsgnvqmkdggrleilgd
gyfkqfiklendstyhlrlsvkgtgrvsiideskyllfvnvkdedltrvikntsskgecf
ialegtyvensstifsnvsivke

    Sequence, based on observed residues (ATOM records):
    >6yrgA (A:)
eqnqmlnhvnaqlnainstlniylpkitsmlnevmkqnhvlslqieflskqlqeisdkld
iinlnvlinstlteitpayqrikyvnekfdeltsevienlneltelaksvtkndmdsfef
ylqtfhdvmtgnnlfgrsalktaselitkenvttrgseigkvynflivltslqakafltl
tacrkllgltdidytqimnhhidgqkrefrinilptlsnnfsnpsysknrgsdiddpivv
leaapgyaligfeilndplpilkgyqarlkpnyqvdresmsetiygdihklfcpkqleqk
yyikdiefpegyvitkivfekrlnqlgyevtanfydpstgsidlnkvkveswkeksceed
scedeysiikaetdgiymplgvvsetfltpiygfgltvdeknqkitltgksylresllet
dllnnetyliaspdgyissivenwnitsdntgswrannnnafvdkadtikgssslythkd
gefsqfignklkpktnyviqyvikgrpaiylknnkdtlfedtknnfsdfqtvtkkfnsgv
npseiyflfknqseyeawgnnfiileiksleflpqmlkpedwipsgnvqmkdggrleilg
dgyfkqfiklendstyhlrlsvkgtgrvsiideskyllfvnvkdedltrvikntsskgec
fialegtyvensstifsnvsivke

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6yrgB (B:)
mvqkwmqrmiivdnnklnvralpsfidyfngiygfatgikdimgmifktdtggsnltlde
ilknqnllndisgkldgingdlgdliaqgnlnselakellkisneqnqmlnhvnaqlnai
nstlniylpkitsmlnevmkqnhvlslqieflskqlqeisdkldiinlnvlinstlteit
payqrikyvnekfdeltstveknpksyqdnvtkevienlneltelaksvtkndmdsfefy
lqtfhdvmtgnnlfgrsalktaselitkenvttrgseigkvynflivltslqakafltlt
acrkllgltdidytqimnhhidgqkrefrinilptlsnnfsnpsysknrgsdiddpivvl
eaapgyaligfeilndplpilkgyqarlkpnyqvdresmsetiygdihklfcpkqleqky
yikdiefpegyvitkivfekrlnqlgyevtanfydpstgsidlnkvkveswkeksceeds
cedeysiikaetdgiymplgvvsetfltpiygfgltvdeknqkitltgksylreslletd
llnnetyliaspdgyissivenwnitsdntgswrannnnafvdkadtikgssslythkdg
efsqfignklkpktnyviqyvikgrpaiylknnkdtlfedtknnfsdfqtvtkkfnsgvn
pseiyflfknqseyeawgnnfiileiksleflpqmlkpedwipsgnvqmkdggrleilgd
gyfkqfiklendstyhlrlsvkgtgrvsiideskyllfvnvkdedltrvikntsskgecf
ialegtyvensstifsnvsivke

    Sequence, based on observed residues (ATOM records):
    >6yrgB (B:)
eqnqmlnhvnaqlnainstlniylpkitsmlnevmkqnhvlslqieflskqlqeisdkld
iinlnvlinstlteitpayqrikyvnekfdeltsevienlneltelaksvtkndmdsfef
ylqtfhdvmtgnnlfgrsalktaselitkenvttrgseigkvynflivltslqakafltl
tacrkllgltdidytqimnhhidgqkrefrinilptlsnnfsnpsysknrgsdiddpivv
leaapgyaligfeilndplpilkgyqarlkpnyqvdresmsetiygdihklfcpkqleqk
yyikdiefpegyvitkivfekrlnqlgyevtanfydpstgsidlnkvkveswkeksceed
scedeysiikaetdgiymplgvvsetfltpiygfgltvdeknqkitltgksylresllet
dllnnetyliaspdgyissivenwnitsdntgswrannnnafvdkadtikgssslythkd
gefsqfignklkpktnyviqyvikgrpaiylknnkdtlfedtknnfsdfqtvtkkfnsgv
npseiyflfknqseyeawgnnfiileiksleflpqmlkpedwipsgnvqmkdggrleilg
dgyfkqfiklendstyhlrlsvkgtgrvsiideskyllfvnvkdedltrvikntsskgec
fialegtyvensstifsnvsivke

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6yrgC (C:)
mvqkwmqrmiivdnnklnvralpsfidyfngiygfatgikdimgmifktdtggsnltlde
ilknqnllndisgkldgingdlgdliaqgnlnselakellkisneqnqmlnhvnaqlnai
nstlniylpkitsmlnevmkqnhvlslqieflskqlqeisdkldiinlnvlinstlteit
payqrikyvnekfdeltstveknpksyqdnvtkevienlneltelaksvtkndmdsfefy
lqtfhdvmtgnnlfgrsalktaselitkenvttrgseigkvynflivltslqakafltlt
acrkllgltdidytqimnhhidgqkrefrinilptlsnnfsnpsysknrgsdiddpivvl
eaapgyaligfeilndplpilkgyqarlkpnyqvdresmsetiygdihklfcpkqleqky
yikdiefpegyvitkivfekrlnqlgyevtanfydpstgsidlnkvkveswkeksceeds
cedeysiikaetdgiymplgvvsetfltpiygfgltvdeknqkitltgksylreslletd
llnnetyliaspdgyissivenwnitsdntgswrannnnafvdkadtikgssslythkdg
efsqfignklkpktnyviqyvikgrpaiylknnkdtlfedtknnfsdfqtvtkkfnsgvn
pseiyflfknqseyeawgnnfiileiksleflpqmlkpedwipsgnvqmkdggrleilgd
gyfkqfiklendstyhlrlsvkgtgrvsiideskyllfvnvkdedltrvikntsskgecf
ialegtyvensstifsnvsivke

    Sequence, based on observed residues (ATOM records):
    >6yrgC (C:)
eqnqmlnhvnaqlnainstlniylpkitsmlnevmkqnhvlslqieflskqlqeisdkld
iinlnvlinstlteitpayqrikyvnekfdeltsevienlneltelaksvtkndmdsfef
ylqtfhdvmtgnnlfgrsalktaselitkenvttrgseigkvynflivltslqakafltl
tacrkllgltdidytqimnhhidgqkrefrinilptlsnnfsnpsysknrgsdiddpivv
leaapgyaligfeilndplpilkgyqarlkpnyqvdresmsetiygdihklfcpkqleqk
yyikdiefpegyvitkivfekrlnqlgyevtanfydpstgsidlnkvkveswkeksceed
scedeysiikaetdgiymplgvvsetfltpiygfgltvdeknqkitltgksylresllet
dllnnetyliaspdgyissivenwnitsdntgswrannnnafvdkadtikgssslythkd
gefsqfignklkpktnyviqyvikgrpaiylknnkdtlfedtknnfsdfqtvtkkfnsgv
npseiyflfknqseyeawgnnfiileiksleflpqmlkpedwipsgnvqmkdggrleilg
dgyfkqfiklendstyhlrlsvkgtgrvsiideskyllfvnvkdedltrvikntsskgec
fialegtyvensstifsnvsivke

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6yrgD (D:)
mvqkwmqrmiivdnnklnvralpsfidyfngiygfatgikdimgmifktdtggsnltlde
ilknqnllndisgkldgingdlgdliaqgnlnselakellkisneqnqmlnhvnaqlnai
nstlniylpkitsmlnevmkqnhvlslqieflskqlqeisdkldiinlnvlinstlteit
payqrikyvnekfdeltstveknpksyqdnvtkevienlneltelaksvtkndmdsfefy
lqtfhdvmtgnnlfgrsalktaselitkenvttrgseigkvynflivltslqakafltlt
acrkllgltdidytqimnhhidgqkrefrinilptlsnnfsnpsysknrgsdiddpivvl
eaapgyaligfeilndplpilkgyqarlkpnyqvdresmsetiygdihklfcpkqleqky
yikdiefpegyvitkivfekrlnqlgyevtanfydpstgsidlnkvkveswkeksceeds
cedeysiikaetdgiymplgvvsetfltpiygfgltvdeknqkitltgksylreslletd
llnnetyliaspdgyissivenwnitsdntgswrannnnafvdkadtikgssslythkdg
efsqfignklkpktnyviqyvikgrpaiylknnkdtlfedtknnfsdfqtvtkkfnsgvn
pseiyflfknqseyeawgnnfiileiksleflpqmlkpedwipsgnvqmkdggrleilgd
gyfkqfiklendstyhlrlsvkgtgrvsiideskyllfvnvkdedltrvikntsskgecf
ialegtyvensstifsnvsivke

    Sequence, based on observed residues (ATOM records):
    >6yrgD (D:)
eqnqmlnhvnaqlnainstlniylpkitsmlnevmkqnhvlslqieflskqlqeisdkld
iinlnvlinstlteitpayqrikyvnekfdeltsevienlneltelaksvtkndmdsfef
ylqtfhdvmtgnnlfgrsalktaselitkenvttrgseigkvynflivltslqakafltl
tacrkllgltdidytqimnhhidgqkrefrinilptlsnnfsnpsysknrgsdiddpivv
leaapgyaligfeilndplpilkgyqarlkpnyqvdresmsetiygdihklfcpkqleqk
yyikdiefpegyvitkivfekrlnqlgyevtanfydpstgsidlnkvkveswkeksceed
scedeysiikaetdgiymplgvvsetfltpiygfgltvdeknqkitltgksylresllet
dllnnetyliaspdgyissivenwnitsdntgswrannnnafvdkadtikgssslythkd
gefsqfignklkpktnyviqyvikgrpaiylknnkdtlfedtknnfsdfqtvtkkfnsgv
npseiyflfknqseyeawgnnfiileiksleflpqmlkpedwipsgnvqmkdggrleilg
dgyfkqfiklendstyhlrlsvkgtgrvsiideskyllfvnvkdedltrvikntsskgec
fialegtyvensstifsnvsivke