PDB entry 6ypv
View 6ypv on RCSB PDB site
Description: Alpha-ketoglutarate-dependent dioxygenase AlkB in complex with Fe and AKG after oxygen exposure using FT-SSX methods
Class: oxidoreductase
Keywords: iron dependent dioxygenase, DNA repait, 2-oxoglutarate, OXIDOREDUCTASE
Deposited on
2020-04-16, released
2020-09-09
The last revision prior to the SCOPe 2.07 freeze date was dated
2020-09-30, with a file datestamp of
2020-09-25.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: N/A
AEROSPACI score: 0.37
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: Alpha-ketoglutarate-dependent dioxygenase AlkB
Species: Escherichia coli (strain K12) [TaxId:83333]
Gene: alkB, aidD, b2212, JW2200
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.07: d6ypva_ - Heterogens: AKG, FE, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>6ypvA (A:)
mldlfadaepwqeplaagavilrrfafnaaeqlirdindvasqspfrqmvtpggytmsva
mtncghlgwtthrqgylyspidpqtnkpwpampqsfhnlcqraataagypdfqpdaclin
ryapgaklslhqdkdepdlrapivsvslglpaifqfgglkrndplkrlllehgdvvvwgg
esrlfyhgiqplkagfhpltidcrynltfrqagkke
Sequence, based on observed residues (ATOM records): (download)
>6ypvA (A:)
laagavilrrfafnaaeqlirdindvasqspfrqmvtpggytmsvamtncghlgwtthrq
gylyspidpqtnkpwpampqsfhnlcqraataagypdfqpdaclinryapgaklslhqdk
depdlrapivsvslglpaifqfgglkrndplkrlllehgdvvvwggesrlfyhgiqplka
gfhpltidcrynltfrqag