PDB entry 6ypv

View 6ypv on RCSB PDB site
Description: Alpha-ketoglutarate-dependent dioxygenase AlkB in complex with Fe and AKG after oxygen exposure using FT-SSX methods
Class: oxidoreductase
Keywords: iron dependent dioxygenase, DNA repait, 2-oxoglutarate, OXIDOREDUCTASE
Deposited on 2020-04-16, released 2020-09-09
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-09-30, with a file datestamp of 2020-09-25.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: N/A
AEROSPACI score: 0.37 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Alpha-ketoglutarate-dependent dioxygenase AlkB
    Species: Escherichia coli (strain K12) [TaxId:83333]
    Gene: alkB, aidD, b2212, JW2200
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6ypva_
  • Heterogens: AKG, FE, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6ypvA (A:)
mldlfadaepwqeplaagavilrrfafnaaeqlirdindvasqspfrqmvtpggytmsva
mtncghlgwtthrqgylyspidpqtnkpwpampqsfhnlcqraataagypdfqpdaclin
ryapgaklslhqdkdepdlrapivsvslglpaifqfgglkrndplkrlllehgdvvvwgg
esrlfyhgiqplkagfhpltidcrynltfrqagkke

    Sequence, based on observed residues (ATOM records): (download) 
    >6ypvA (A:)
laagavilrrfafnaaeqlirdindvasqspfrqmvtpggytmsvamtncghlgwtthrq
gylyspidpqtnkpwpampqsfhnlcqraataagypdfqpdaclinryapgaklslhqdk
depdlrapivsvslglpaifqfgglkrndplkrlllehgdvvvwggesrlfyhgiqplka
gfhpltidcrynltfrqag