PDB entry 6ypt

View 6ypt on RCSB PDB site
Description: x-ray structure of turnip yellow mosaic virus pro/dub in complex with ubiquitin
Deposited on 2020-04-16, released 2020-08-05
The last revision was dated 2020-08-05, with a file datestamp of 2020-07-31.
Experiment type: XRAY
Resolution: 3.66 Å
R-factor: N/A
AEROSPACI score: 0.15 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: RNA replicase polyprotein
    Species: Turnip yellow mosaic virus [TaxId:12154]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Polyubiquitin-C
    Species: Homo sapiens [TaxId:9606]
    Gene: UBC
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: RNA replicase polyprotein
    Species: Turnip yellow mosaic virus [TaxId:12154]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Polyubiquitin-C
    Species: Homo sapiens [TaxId:9606]
    Gene: UBC
    Database cross-references and differences (RAF-indexed):
  • Heterogens: GVE

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6yptA (A:)
mhhhhhhgssqllpapltndptaigpvlpfeelhprrypentatfltrlrslpsnhlpqp
tlncllsavsdqtkvseehlweslqtilpdsqlsneetntlglstehltalahlynfqat
vysdrgpilfgpsdtikridithttgppshfspgkrllgs

    Sequence, based on observed residues (ATOM records):
    >6yptA (A:)
lpapltndptaigpvlpfeelhprrypentatfltrlrslpsnhlpqptlncllsavsdq
tkvseehlweslqtilpdsqlsneetntlglstehltalahlynfqatvysdrgpilfgp
sdtikridithttgppshfspgkrl

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6yptB (B:)
mypydvpdyamqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkql
edgrtlsdyniqkestlhlvlrlrgg

    Sequence, based on observed residues (ATOM records):
    >6yptB (B:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlrg

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6yptC (C:)
mhhhhhhgssqllpapltndptaigpvlpfeelhprrypentatfltrlrslpsnhlpqp
tlncllsavsdqtkvseehlweslqtilpdsqlsneetntlglstehltalahlynfqat
vysdrgpilfgpsdtikridithttgppshfspgkrllgs

    Sequence, based on observed residues (ATOM records):
    >6yptC (C:)
lpapltndptaigpvlpfeelhprrypentatfltrlrslpsnhlpqptlncllsavsdq
tkvseehlweslqtilpdsqlsneetntlglstehltalahlynfqatvysdrgpilfgp
sdtikridithttgppshfspgkrl

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6yptD (D:)
mypydvpdyamqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkql
edgrtlsdyniqkestlhlvlrlrgg

    Sequence, based on observed residues (ATOM records):
    >6yptD (D:)
mqifvktltgktitlevepsdtienvkakiqdkegippdqqrlifagkqledgrtlsdyn
iqkestlhlvlrlrg