PDB entry 6ypc

View 6ypc on RCSB PDB site
Description: crystal structure of the kinetochore subunits h/i/k/t/w penta-complex from s. cerevisiae at 2.9 angstroms
Deposited on 2020-04-15, released 2020-09-16
The last revision was dated 2021-03-03, with a file datestamp of 2021-02-26.
Experiment type: XRAY
Resolution: 2.9 Å
R-factor: N/A
AEROSPACI score: 0.19 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'H':
    Compound: Inner kinetochore subunit Mcm16
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: MCM16, YPR046W
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: Inner kinetochore subunit CTF3
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: CTF3, CHL3, YLR381W
    Database cross-references and differences (RAF-indexed):
  • Chain 'K':
    Compound: Inner kinetochore subunit Mcm22
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: MCM22, YJR135C, J2122
    Database cross-references and differences (RAF-indexed):
  • Chain 'T':
    Compound: Inner kinetochore subunit CNN1
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: CNN1, YFR046C
    Database cross-references and differences (RAF-indexed):
  • Chain 'W':
    Compound: Inner kinetochore subunit WIP1
    Species: Saccharomyces cerevisiae (strain ATCC 204508 / S288c) [TaxId:559292]
    Gene: WIP1, YDR374W-A
    Database cross-references and differences (RAF-indexed):
  • Heterogens: HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6ypcH (H:)
mkptippddsdtagkqvevekenetiqelmialqihsgytnisyti

    Sequence, based on observed residues (ATOM records):
    >6ypcH (H:)
tagkqvevekenetiqelmialqihsgytnisyti

  • Chain 'I':
    Sequence, based on SEQRES records:
    >6ypcI (I:)
mslilddiilsltnanertppqalkttlsllyekskqyglsspqlqalvrllcetsiidt
vtkvyivencflpdgyltkellleiinhlgtptvfsryriqtppvlqsalckwlvhvyfl
fpvhserehnisssiwlhlwqfsflqkwitplviwqattpvdvkpwklsiikrcamhpgy
rdapgsatlilqrfqclvgassqitesiitincnrktlkshrnlkldahflsilkrilsr
ahpanenlyfq

    Sequence, based on observed residues (ATOM records):
    >6ypcI (I:)
slilddiilsltnanertppqalkttlsllyekskqyglsspqlqalvrllcetsiidtv
tkvyivencflpdgyltkellleiinhlgtptvfsryriqtppvlqsalckwlvhvyflf
pvhserehnisssiwlhlwqfsflqkwitplviwqattpvdvkpwklsiikrcamhpgyr
dapgsatlilqrfqclvgassqitesiitincnrktlkshrnlkldahflsilkrilsra

  • Chain 'K':
    Sequence, based on SEQRES records:
    >6ypcK (K:)
mkkqdhahirtrkarnkelwdsladflkgylvpnlddndesidsltnevmllmkrliehd
lnltlndfssktipiyrlllraniitviegstnpgtkyiklidfnetslt

    Sequence, based on observed residues (ATOM records):
    >6ypcK (K:)
ahirtrkarnkelwdsladflkgylvpnlddndesidsltnevmllmkrliehdlnltln
dfssktipiyrlllraniitvienpgtkyiklidfnets

  • Chain 'T':
    Sequence, based on SEQRES records:
    >6ypcT (T:)
mstprkaagnnentevseirtpfreraleeqrlkdevlirntpgyrkllsastkshdiln
kdpnevrsflqdlsqvlarksqgndtttnktqarnlidelayeesqpeenellrsrsekl
tdnnignetqpdytslsqtvfaklqerdkglksrkidpiiiqdvpttghedeltvhspdk
ansismevlrtspsigmdqvdeppvrdpvpisitqqeeplsedlpsddkeeteeaenedy
sfentsdenlddigndpirlnvpavrrssikplqimdlkhltrqflnenriilpkqtwst
iqeeslnimdflkqkigtlqkqelvdsfidmgiinnvddmfelahellplelqsriesyl
fenlyfq

    Sequence, based on observed residues (ATOM records):
    >6ypcT (T:)
sikplqimdlkhltrqflnenriilpkqtwstiqeeslnimdflkqkigtlqkqelvdsf
idmgiinnvddmfelahellplelqsriesyl

  • Chain 'W':
    Sequence, based on SEQRES records:
    >6ypcW (W:)
mdtealanyllrqlsldaeenkledllqrqnedqessqeynkklllacgfqailrkilld
artrataeglrevypyhieaatqafldsq

    Sequence, based on observed residues (ATOM records):
    >6ypcW (W:)
mdtealanyllrqlsssqeynkklllacgfqailrkilldartrataeglrevypyhiea
atqafldsq