PDB entry 6yog

View 6yog on RCSB PDB site
Description: structure of peptst from coc imisx setup collected by still serial crystallography on crystals prelocated by 2d x-ray phase-contrast imaging
Deposited on 2020-04-14, released 2020-11-04
The last revision was dated 2020-12-02, with a file datestamp of 2020-11-27.
Experiment type: XRAY
Resolution: 2.3 Å
R-factor: N/A
AEROSPACI score: 0.31 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: di-or tripeptide:h+ symporter
    Species: Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) [TaxId:264199]
    Gene: dtpT, stu0970
    Database cross-references and differences (RAF-indexed):
  • Heterogens: PO4, 78M, PG0, PGE, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6yogA (A:)
    medkgktffgqplglstlfmtemwerfsyygmraillyymwflistgdlhitrataasim
    aiyasmvylsgtiggfvadriigarpavfwggvlimlghivlalpfgasalfgsiiliii
    gtgflkpnvstlvgtlydehdrrrdagfsifvfginlgafiaplivgaaqeaagyhvafs
    laaigmfigllvyyfggkktldphylrptdplapeevkpllvkvslavagfiaiivvmnl
    vgwnslpayinlltivaiaipvfyfawmissvkvtstehlrvvsyiplfiaavlfwaiee
    qgsvvlatfaaervdsswfpvswfqslnplfimlytpffawlwtawkknqpssptkfavg
    lmfaglsfllmaipgalygtsgkvsplwlvgswalvilgemlispvglsvttklapkafn
    sqmmsmwflsssvgsalnaqlvtlynaksevayfsyfglgsvvlgivlvflskriqglmq
    gve
    

    Sequence, based on observed residues (ATOM records):
    >6yogA (A:)
    gktffgqplglstlfmtemwerfsyygmraillyymwflistgdlhitrataasimaiya
    smvylsgtiggfvadriigarpavfwggvlimlghivlalpfgasalfgsiiliiigtgf
    lkpnvstlvgtlydehdrrrdagfsifvfginlgafiaplivgaaqeaagyhvafslaai
    gmfigllvyyfggkktldphylrptdplapeevkpllvkvslavagfiaiivvmnlvgwn
    slpayinlltivaiaipvfyfawmitstehlrvvsyiplfiaavlfwaieeqgsvvlatf
    aaervdsswfpvswfqslnplfimlytpffawlwtawkknqpssptkfavglmfaglsfl
    lmaipgalygtsgkvsplwlvgswalvilgemlismmsmwflsssvgsalnaqlvtlyna
    ksevayfsyfglgsvvlgivlvflskri