PDB entry 6ynn
View 6ynn on RCSB PDB site
Description: Crystal structure of YTHDC1 with compound DHU_DC1_135
Class: RNA binding protein
Keywords: YTHDC1, m6A, complex, inhibitor, RNA BINDING PROTEIN
Deposited on
2020-04-14, released
2020-07-15
The last revision prior to the SCOPe 2.08 freeze date was dated
2021-03-31, with a file datestamp of
2021-03-26.
Experiment type: XRAY
Resolution: 1.2 Å
R-factor: N/A
AEROSPACI score: 0.74
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: ythdc1
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6ynna1, d6ynna2 - Chain 'B':
Compound: ythdc1
Species: Homo sapiens [TaxId:9606]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d6ynnb1, d6ynnb2 - Heterogens: P0B, SO4, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>6ynnA (A:)
mhhhhhhssgrenlyfqgtsklkyvlqdarffliksnnhenvslakakgvwstlpvnekk
lnlafrsarsvilifsvresgkfqgfarlsseshhggspihwvlpagmsakmlggvfkid
wicrrelpftksahltnpwnehkpvkigrdgqeielecgtqlcllfppdesidlyqvihk
mrh
Sequence, based on observed residues (ATOM records): (download)
>6ynnA (A:)
gtsklkyvlqdarffliksnnhenvslakakgvwstlpvnekklnlafrsarsvilifsv
resgkfqgfarlsseshhggspihwvlpagmsakmlggvfkidwicrrelpftksahltn
pwnehkpvkigrdgqeielecgtqlcllfppdesidlyqvihkm
- Chain 'B':
Sequence, based on SEQRES records: (download)
>6ynnB (B:)
mhhhhhhssgrenlyfqgtsklkyvlqdarffliksnnhenvslakakgvwstlpvnekk
lnlafrsarsvilifsvresgkfqgfarlsseshhggspihwvlpagmsakmlggvfkid
wicrrelpftksahltnpwnehkpvkigrdgqeielecgtqlcllfppdesidlyqvihk
mrh
Sequence, based on observed residues (ATOM records): (download)
>6ynnB (B:)
gtsklkyvlqdarffliksnnhenvslakakgvwstlpvnekklnlafrsarsvilifsv
resgkfqgfarlsseshhggspihwvlpagmsakmlggvfkidwicrrelpftksahltn
pwnehkpvkigrdgqeielecgtqlcllfppdesidlyqvihkm