PDB entry 6ykl

View 6ykl on RCSB PDB site
Description: neisseria gonorrhoeae leucyl-trna synthetase in complex with compound 11k
Deposited on 2020-04-06, released 2020-12-02
The last revision was dated 2021-02-03, with a file datestamp of 2021-01-29.
Experiment type: XRAY
Resolution: 2.27 Å
R-factor: N/A
AEROSPACI score: 0.33 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: leucine--tRNA ligase
    Species: NEISSERIA GONORRHOEAE [TaxId:485]
    Gene: leuS, VT05_02036, WHOO_00006, WHOO_00455
    Database cross-references and differences (RAF-indexed):
    • Uniprot A0A5K1KQ39 (1-876)
      • engineered mutation (454)
      • conflict (508)
  • Heterogens: OVH, EDO, MG, ZN, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6yklA (A:)
gmqehyqpaaiepaaqkkwddarisnvsedaskpkyyclsmfpypsgklhmghvrnytig
dvlsrfkllngfnvmqpmgwdafgmpaenaamknnvapaawtydnieymktqlkslgfav
dwerevatckpeyyrweqwlftklfekgivyrkngtvnwdpvdqtvlaneqvidgrgwrs
galiekreipmyyfkitdyaeellndldklehwpeqvktmqrnwigksrgmtvrfavsdd
skqglegdyakflqvyttrpdtlmgatyvavaaehplataaaadkpelqafiaeckagsv
aeadmatmekkgvptgryvvnplngdklevwianyvlwgygdgavmavpahderdfefaa
kynlpkkqviavgdnafdanrwqewygdkengvlvnsgdldgldfqtafdavaaklqsqg
agepktqyrlrdwgisrqrywgcpipivhcekcgnvpvpadqlpvvlpenvvpdgmgspl
akmpefyetscpccggaakretdtmdtfiesswyffrymspkfsdgmvsaesakywgavd
qyiggiehailhllyarfftklmrdeglvnvdepferlltqgmvvcetyyrendkggkdw
inpadveltfddkgrpvsavlkadglpvvisgtekmsksknngvdpqelinaygadtarl
fmmfaappeqslewsdsgvegahrflrrlwrtvyeylkqggavkafagnqdglskelkdl
rhklhsttakvsddygrrqqfntaiaavmellnqydktdtgseqgravaqevleaavrll
wpivphicetlwselngaklweagwptvdeaalvkseievmvqvngklrgkitvaadask
adleaaalanegavkfmegkpakkiivvpgrlvnivv

    Sequence, based on observed residues (ATOM records):
    >6yklA (A:)
mqehyqpaaiepaaqkkwddarisnvsedaskpkyyclsmfpypsgklhmghvrnytigd
vlsrfkllngfnvmqpmgwdafgmpaenaamknnvapaawtydnieymktqlkslgfavd
werevatckpeyyrweqwlftklfekgivyrkngtvnwdpvdqtvlaneqvidgrgwrsg
aliekreipmyyfkitdyaeellndldklehwpeqvktmqrnwigksrgmtvrfavsdds
kqglegdyakflqvyttrpdtlmgatyvavaaehplataaaadkpelqafiaeckagsva
eadmatmekkgvptgryvvnplngdklevwianyvlwgygdgavmavpahderdfefaak
ynlpkkqviavgdnafdanrwqewygdkengvlvnsgdldgldfqtafdavaaklqsqga
gepktqyrlrdwgisrqrywgcpipivhcekcgnvpvpadqlpvvlpenvvpdgmgspla
kmpefyetscpccggaakretdtmdtfiesswyffrymspkfsdgmvsaesakywgavdq
yiggiehailhllyarfftklmrdeglvnvdepferlltqgmvvcetyyrendkdwinpa
dveltgrpvsavlkadglpvvisgtekmsksknngvdpqelinaygadtarlfmmfaapp
eqslewsdsgvegahrflrrlwrtvyeylkqggavkafagnqdglskelkdlrhklhstt
akvsddygrrqqfntaiaavmellnqydktdtgseqgravaqevleaavrllwpivphic
etlwselngaklweagwptvdeaalvksevmvqvngkladleaaalaniivvpgrlvniv
v