PDB entry 6yi5

View 6yi5 on RCSB PDB site
Description: in-situ structure of the trimeric hef from influenza c by flexible fitting into a cryo-et map.
Deposited on 2020-03-31, released 2021-03-24
The last revision was dated 2021-03-31, with a file datestamp of 2021-03-26.
Experiment type: EM
Resolution: 9.1 Å
R-factor: N/A
AEROSPACI score: -0.01 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Hemagglutinin-esterase-fusion glycoprotein
    Species: Influenza C virus (strain C/Johannesburg/1/1966) [TaxId:100673]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Hemagglutinin-esterase-fusion glycoprotein
    Species: Influenza C virus (strain C/Johannesburg/1/1966) [TaxId:100673]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Hemagglutinin-esterase-fusion glycoprotein
    Species: Influenza C virus (strain C/Johannesburg/1/1966) [TaxId:100673]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: Hemagglutinin-esterase-fusion glycoprotein
    Species: Influenza C virus (strain C/Johannesburg/1/1966) [TaxId:100673]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: Hemagglutinin-esterase-fusion glycoprotein
    Species: Influenza C virus (strain C/Johannesburg/1/1966) [TaxId:100673]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: Hemagglutinin-esterase-fusion glycoprotein
    Species: Influenza C virus (strain C/Johannesburg/1/1966) [TaxId:100673]
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6yi5A (A:)
ekikiclqkqvnssfslhngfggnlyateekrmfelvkpkagasvlnqstwigfgdsrtd
ksnsafprsadvsaktadkfrflsggslmlsmfgppgkvdylyqgcgkhkvfyegvnwsp
haaincyrknwtdiklnfqkniyelasqshcmslvnaldktiplqvtagtagncnnsflk
npalytqevkpsenkcgkenlafftlptqfgtyecklhlvascyfiydskevynkrgcdn
yfqviydsfgkvvggldnrvspytgnsgdtptmqcdmlqlkpgrysvrssprfllmpers
ycfdmkekgpvtavqsiwgkgresdyavdqaclstpgcmliqkqkpyigeaddhhgdqem
rellsgldyearcisqsgwvnetspftekyllppkfgrcplaakeesipkipdgllipts
gtdttvtkpksr

    Sequence, based on observed residues (ATOM records):
    >6yi5A (A:)
ekikiclqkqvnssfslhngfggnlyateekrmfelvkpkagasvlnqstwigfgdsrtd
ksnsafprsadvsaktadkfrflsggslmlsmfgppgkvdylyqgcgkhkvfyegvnwsp
haaincyrknwtdiklnfqkniyelasqshcmslvnaldktiplqvtagtagncnnsflk
npalytqevkpsenkcgkenlafftlptqfgtyecklhlvascyfiydskevynkrgcdn
yfqviydsfgkvvggldnrvspytgnsgdtptmqcdmlqlkpgrysvrssprfllmpers
ycfdmkekgpvtavqsiwgkgresdyavdqaclstpgcmliqkqkpyigeaddhhgdqem
rellsgldyearcisqsgwvnetspftekyllppkfgrcplaakeesipkipdgllipts
gtdttvt

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6yi5B (B:)
ifgiddliigvlfvaivetgiggyllgsrkesgggvtkesaekgfekigndiqilkssin
iaieklndrishdeqairdltleienarseallgelgiirallvgnisiglqeslwelas
eitnragdlavevspgcwiidnnicdqscqnfifkfnetapvptippldtkidlq

    Sequence, based on observed residues (ATOM records):
    >6yi5B (B:)
iddliigvlfvaivetgiggyllgsrkesgggvtkesaekgfekigndiqilkssiniai
eklndrishdeqairdltleienarseallgelgiirallvgnisiglqeslwelaseit
nragdlavevspgcwiidnnicdqscqnfifkfnetapvpti

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6yi5C (C:)
ekikiclqkqvnssfslhngfggnlyateekrmfelvkpkagasvlnqstwigfgdsrtd
ksnsafprsadvsaktadkfrflsggslmlsmfgppgkvdylyqgcgkhkvfyegvnwsp
haaincyrknwtdiklnfqkniyelasqshcmslvnaldktiplqvtagtagncnnsflk
npalytqevkpsenkcgkenlafftlptqfgtyecklhlvascyfiydskevynkrgcdn
yfqviydsfgkvvggldnrvspytgnsgdtptmqcdmlqlkpgrysvrssprfllmpers
ycfdmkekgpvtavqsiwgkgresdyavdqaclstpgcmliqkqkpyigeaddhhgdqem
rellsgldyearcisqsgwvnetspftekyllppkfgrcplaakeesipkipdgllipts
gtdttvtkpksr

    Sequence, based on observed residues (ATOM records):
    >6yi5C (C:)
ekikiclqkqvnssfslhngfggnlyateekrmfelvkpkagasvlnqstwigfgdsrtd
ksnsafprsadvsaktadkfrflsggslmlsmfgppgkvdylyqgcgkhkvfyegvnwsp
haaincyrknwtdiklnfqkniyelasqshcmslvnaldktiplqvtagtagncnnsflk
npalytqevkpsenkcgkenlafftlptqfgtyecklhlvascyfiydskevynkrgcdn
yfqviydsfgkvvggldnrvspytgnsgdtptmqcdmlqlkpgrysvrssprfllmpers
ycfdmkekgpvtavqsiwgkgresdyavdqaclstpgcmliqkqkpyigeaddhhgdqem
rellsgldyearcisqsgwvnetspftekyllppkfgrcplaakeesipkipdgllipts
gtdttvt

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6yi5D (D:)
ifgiddliigvlfvaivetgiggyllgsrkesgggvtkesaekgfekigndiqilkssin
iaieklndrishdeqairdltleienarseallgelgiirallvgnisiglqeslwelas
eitnragdlavevspgcwiidnnicdqscqnfifkfnetapvptippldtkidlq

    Sequence, based on observed residues (ATOM records):
    >6yi5D (D:)
iddliigvlfvaivetgiggyllgsrkesgggvtkesaekgfekigndiqilkssiniai
eklndrishdeqairdltleienarseallgelgiirallvgnisiglqeslwelaseit
nragdlavevspgcwiidnnicdqscqnfifkfnetapvpti

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6yi5E (E:)
ekikiclqkqvnssfslhngfggnlyateekrmfelvkpkagasvlnqstwigfgdsrtd
ksnsafprsadvsaktadkfrflsggslmlsmfgppgkvdylyqgcgkhkvfyegvnwsp
haaincyrknwtdiklnfqkniyelasqshcmslvnaldktiplqvtagtagncnnsflk
npalytqevkpsenkcgkenlafftlptqfgtyecklhlvascyfiydskevynkrgcdn
yfqviydsfgkvvggldnrvspytgnsgdtptmqcdmlqlkpgrysvrssprfllmpers
ycfdmkekgpvtavqsiwgkgresdyavdqaclstpgcmliqkqkpyigeaddhhgdqem
rellsgldyearcisqsgwvnetspftekyllppkfgrcplaakeesipkipdgllipts
gtdttvtkpksr

    Sequence, based on observed residues (ATOM records):
    >6yi5E (E:)
ekikiclqkqvnssfslhngfggnlyateekrmfelvkpkagasvlnqstwigfgdsrtd
ksnsafprsadvsaktadkfrflsggslmlsmfgppgkvdylyqgcgkhkvfyegvnwsp
haaincyrknwtdiklnfqkniyelasqshcmslvnaldktiplqvtagtagncnnsflk
npalytqevkpsenkcgkenlafftlptqfgtyecklhlvascyfiydskevynkrgcdn
yfqviydsfgkvvggldnrvspytgnsgdtptmqcdmlqlkpgrysvrssprfllmpers
ycfdmkekgpvtavqsiwgkgresdyavdqaclstpgcmliqkqkpyigeaddhhgdqem
rellsgldyearcisqsgwvnetspftekyllppkfgrcplaakeesipkipdgllipts
gtdttvt

  • Chain 'F':
    Sequence, based on SEQRES records:
    >6yi5F (F:)
ifgiddliigvlfvaivetgiggyllgsrkesgggvtkesaekgfekigndiqilkssin
iaieklndrishdeqairdltleienarseallgelgiirallvgnisiglqeslwelas
eitnragdlavevspgcwiidnnicdqscqnfifkfnetapvptippldtkidlq

    Sequence, based on observed residues (ATOM records):
    >6yi5F (F:)
iddliigvlfvaivetgiggyllgsrkesgggvtkesaekgfekigndiqilkssiniai
eklndrishdeqairdltleienarseallgelgiirallvgnisiglqeslwelaseit
nragdlavevspgcwiidnnicdqscqnfifkfnetapvpti