PDB entry 6yhs

View 6yhs on RCSB PDB site
Description: acinetobacter baumannii ribosome-amikacin complex - 50s subunit
Deposited on 2020-03-30, released 2020-09-16
The last revision was dated 2020-10-14, with a file datestamp of 2020-10-09.
Experiment type: EM
Resolution: 2.7 Å
R-factor: N/A
AEROSPACI score: 0.23 (click here for full SPACI score report)

Chains and heterogens:

  • Chain '1':
    Compound: 23S ribosomal RNA
    Species: Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841 [TaxId:575584]
  • Chain '5':
    Compound: 5S ribosomal RNA
    Species: Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841 [TaxId:575584]
  • Chain '6':
    Compound: E-site tRNA
    Species: Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841 [TaxId:575584]
  • Chain '8':
    Compound: E-site tRNA
    Species: Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841 [TaxId:575584]
  • Chain 'A':
    Compound: 50S ribosomal protein L2
    Species: Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841 [TaxId:575584]
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: 50S ribosomal protein L3
    Species: Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841 [TaxId:575584]
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: 50S ribosomal protein L4
    Species: Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841 [TaxId:575584]
    Database cross-references and differences (RAF-indexed):
  • Chain 'D':
    Compound: 50S ribosomal protein L5
    Species: Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841 [TaxId:575584]
    Database cross-references and differences (RAF-indexed):
  • Chain 'E':
    Compound: 50S ribosomal protein L6
    Species: Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841 [TaxId:575584]
    Database cross-references and differences (RAF-indexed):
  • Chain 'F':
    Compound: 50S ribosomal protein L13
    Species: Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841 [TaxId:575584]
    Database cross-references and differences (RAF-indexed):
  • Chain 'G':
    Compound: 50S ribosomal protein L14
    Species: Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841 [TaxId:575584]
    Database cross-references and differences (RAF-indexed):
  • Chain 'H':
    Compound: 50S ribosomal protein L15
    Species: Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841 [TaxId:575584]
    Database cross-references and differences (RAF-indexed):
  • Chain 'I':
    Compound: 50S ribosomal protein L16
    Species: Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841 [TaxId:575584]
    Database cross-references and differences (RAF-indexed):
  • Chain 'J':
    Compound: 50S ribosomal protein L17
    Species: Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841 [TaxId:575584]
    Database cross-references and differences (RAF-indexed):
  • Chain 'K':
    Compound: 50S ribosomal protein L18
    Species: Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841 [TaxId:575584]
    Database cross-references and differences (RAF-indexed):
  • Chain 'L':
    Compound: 50S ribosomal protein L19
    Species: Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841 [TaxId:575584]
    Database cross-references and differences (RAF-indexed):
  • Chain 'M':
    Compound: 50S ribosomal protein L20
    Species: Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841 [TaxId:575584]
    Database cross-references and differences (RAF-indexed):
  • Chain 'N':
    Compound: 50S ribosomal protein L21
    Species: Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841 [TaxId:575584]
    Database cross-references and differences (RAF-indexed):
  • Chain 'O':
    Compound: 50S ribosomal protein L22
    Species: Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841 [TaxId:575584]
    Database cross-references and differences (RAF-indexed):
  • Chain 'P':
    Compound: 50S ribosomal protein L23
    Species: Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841 [TaxId:575584]
    Database cross-references and differences (RAF-indexed):
  • Chain 'Q':
    Compound: 50S ribosomal protein L24
    Species: Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841 [TaxId:575584]
    Database cross-references and differences (RAF-indexed):
  • Chain 'R':
    Compound: 50S ribosomal protein L25
    Species: Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841 [TaxId:575584]
    Database cross-references and differences (RAF-indexed):
  • Chain 'S':
    Compound: 50S ribosomal protein L27
    Species: Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841 [TaxId:575584]
    Database cross-references and differences (RAF-indexed):
  • Chain 'T':
    Compound: 50S ribosomal protein L28
    Species: Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841 [TaxId:575584]
    Database cross-references and differences (RAF-indexed):
  • Chain 'U':
    Compound: 50S ribosomal protein L29
    Species: Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841 [TaxId:575584]
    Database cross-references and differences (RAF-indexed):
  • Chain 'V':
    Compound: 50S ribosomal protein L30
    Species: Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841 [TaxId:575584]
    Database cross-references and differences (RAF-indexed):
  • Chain 'X':
    Compound: 50S ribosomal protein L32
    Species: Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841 [TaxId:575584]
    Database cross-references and differences (RAF-indexed):
  • Chain 'Y':
    Compound: 50S ribosomal protein L33
    Species: Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841 [TaxId:575584]
    Database cross-references and differences (RAF-indexed):
  • Chain 'Z':
    Compound: 50S ribosomal protein L34
    Species: Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841 [TaxId:575584]
    Database cross-references and differences (RAF-indexed):
  • Chain 'a':
    Compound: 50S ribosomal protein L35
    Species: Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841 [TaxId:575584]
    Database cross-references and differences (RAF-indexed):
  • Chain 'b':
    Compound: 50S ribosomal protein L36
    Species: Acinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841 [TaxId:575584]
    Database cross-references and differences (RAF-indexed):
  • Heterogens: MG, ZN

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain '1':
    No sequence available.

  • Chain '5':
    No sequence available.

  • Chain '6':
    No sequence available.

  • Chain '8':
    No sequence available.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6yhsA (A:)
    mpiqkckptspgrrfvekvvhdhlhkgapyaplveakkrtggrnnnghittrhvggghkq
    hyrivdfkrnkdgvpavverieydpsrtahiallkyadgerryiiapkglragdkvqsgn
    dapirpgnclplrnmpigstlhnvelkigkgaqlarsagasvqllgrdgsyaiirlrsge
    mrkvhvecravigevsnqennlrslgkagaarwrgvrptvrgmamnpidhphgggegrnk
    giqpvspwgqkakgyktrtnkrttkmiirdrrvk
    

    Sequence, based on observed residues (ATOM records):
    >6yhsA (A:)
    piqkckptspgrrfvekvvhdhlhkgapyaplveakkrtggrnnnghittrhvggghkqh
    yrivdfkrnkdgvpavverieydpsrtahiallkyadgerryiiapkglragdkvqsgnd
    apirpgnclplrnmpigstlhnvelkigkgaqlarsagasvqllgrdgsyaiirlrsgem
    rkvhvecravigevsnqennlrslgkagaarwrgvrptvrgmamnpidhphgggegrnkg
    iqpvspwgqkakgyktrtnkrttkmiirdrrv
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6yhsB (B:)
    maiglvgrkcgmtriftdagvsvpvtvievdpnritqiktletdgyqavqvttgerresr
    vtnaqkghfakagvaagrlvkefrvteaelegrevggtigvdlftvgqivdvtgqskgkg
    fqggvkrwnfrtqdathgnsvshrvlgstgqnqtpgrvfkgkkmaghlgdervtvqglei
    vsvdtersvlvvkgaipgatggdvivrptika
    

    Sequence, based on observed residues (ATOM records):
    >6yhsB (B:)
    aiglvgrkcgmtriftdagvsvpvtvievdpnritqiktletdgyqavqvttgerresrv
    tnaqkghfakagvaagrlvkefrvteaelegrevggtigvdlftvgqivdvtgqskgkgf
    qggvkrwnfrtqdathgnsvshrvlgstgqnqtpgrvfkgkkmaghlgdervtvqgleiv
    svdtersvlvvkgaipgatggdvivrptika
    

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6yhsC (C:)
    mnlktvsgsavelsevafgrefnealvhqvvtaylaggrqgtrahksradvsgggkkpfr
    qkgtgraragsirspiwvgggktfaarpqdwsqkvnrkmyrgamqcilaelvrqdrlvlv
    eefavaapktkellaklndlnaaralivtdavdenlylaarnlphvdvvdataidpvsli
    afdkvvmsvaaakkievelg
    

    Sequence, based on observed residues (ATOM records):
    >6yhsC (C:)
    nlktvsgsavelsevafgrefnealvhqvvtaylaggrqgtrahksradvsgggkkpfrq
    kgtgraragsirspiwvgggktfaarpqdwsqkvnrkmyrgamqcilaelvrqdrlvlve
    efavaapktkellaklndlnaaralivtdavdenlylaarnlphvdvvdataidpvslia
    fdkvvmsvaaakkievelg
    

  • Chain 'D':
    Sequence, based on SEQRES records:
    >6yhsD (D:)
    marlkaryndelkaklqeelsiknvmeipritkitlnmgvgaaatdkklldgavadmqli
    agqkpvvtlarksiagfkirdgwpigckvtlrgdqmyefldrlisiaiprirdfrgfsak
    sfdgrgnysmglkeqivfpeidfdkidrirgmdititttartddegralmrafgfpfk
    

    Sequence, based on observed residues (ATOM records):
    >6yhsD (D:)
    arlkaryndelkaklqeelsiknvmeipritkitlnmgvgaaatdkklldgavadmqlia
    gqkpvvtlarksiagfkirdgwpigckvtlrgdqmyefldrlisiaiprirdfrgfsaks
    fdgrgnysmglkeqivfpeidfdkidrirgmdititttartddegralmrafgfpf
    

  • Chain 'E':
    Sequence, based on SEQRES records:
    >6yhsE (E:)
    msrvakapvtvpngvtvtqngrqvevkgskgtlsfnlhalvelkqeegklqlapakeskd
    awmqagtaravlnnlvkgvsegferklqlvgvgykaavkgtvvnlnlgyshpidyalpeg
    vtaetptateiilksankqllgqvaaeirayrspepykgkgvrysdevilrkeakkk
    

    Sequence, based on observed residues (ATOM records):
    >6yhsE (E:)
    srvakapvtvpngvtvtqngrqvevkgskgtlsfnlhalvelkqeegklqlapakeskda
    wmqagtaravlnnlvkgvsegferklqlvgvgykaavkgtvvnlnlgyshpidyalpegv
    taetptateiilksankqllgqvaaeirayrspepykgkgvrysdevilrkeakk
    

  • Chain 'F':
    Sequence; same for both SEQRES and ATOM records:
    >6yhsF (F:)
    mktlsakpaevqhdwfvvdatgktlgrlateiarrlrgkhktsytphvdagdyiivinae
    qvqvtgnkaldkkyyrhtefpgglketnfeklvahkpeeiferavkgmlpkgplgyamik
    kmkvyagsehphaaqqpqvldi
    

  • Chain 'G':
    Sequence; same for both SEQRES and ATOM records:
    >6yhsG (G:)
    miqtetmldvadnsgarrvqcikvlggshrryasvgdiikvtvkeaiprarvkkgdvmna
    vvvrtkfgirrpdgsvirfddnaavilnnnkapiatrifgpvtrelrteqfmkiislape
    vl
    

  • Chain 'H':
    Sequence, based on SEQRES records:
    >6yhsH (H:)
    mtlrlnelapaegakrehrrlgrgigsgvgktggrgikgqksrksggvrpgfeggqtaiy
    rrlpkfgftsqialktaevrlselskvegdivsletlkaanvvrrdqirarivlsgeitr
    aftvqgvaltkgakaaieaaggkvee
    

    Sequence, based on observed residues (ATOM records):
    >6yhsH (H:)
    tlrlnelapaegakrehrrlgrgigsgvgktggrgikgqksrksggvrpgfeggqtaiyr
    rlpkfgftsqialktaevrlselskvegdivsletlkaanvvrrdqirarivlsgeitra
    ftvqgvaltkgakaaieaaggkve
    

  • Chain 'I':
    Sequence; same for both SEQRES and ATOM records:
    >6yhsI (I:)
    mlqpkrtkfrkvhkgrntglahrgstvsfgsiaikatergrmtarqieaarrtisrrikr
    ggkifirvfpdkpitekplevrmgngkgnveywvceikpgkilyeiegvnedlareafal
    aaaklpfkttivtrtvm
    

  • Chain 'J':
    Sequence, based on SEQRES records:
    >6yhsJ (J:)
    mrhrnsgvklgrtsshrkamfqnlanslfehelikttlpkakelrrvaeplitlakndtv
    anrrlafartrnaatvgklftvlgprykernggylrvlkagfragdaapmayvelvdrev
    ntsae
    

    Sequence, based on observed residues (ATOM records):
    >6yhsJ (J:)
    mrhrnsgvklgrtsshrkamfqnlanslfehelikttlpkakelrrvaeplitlakndtv
    anrrlafartrnaatvgklftvlgprykernggylrvlkagfragdaapmayvelvdre
    

  • Chain 'K':
    Sequence, based on SEQRES records:
    >6yhsK (K:)
    mnekkqsrlrrakstrlhiralgatrlcvnrtprhiyaqvisadggkvlaqastldaslr
    sgttgnieaatkvgaliaerakaagvtkvafdrsgfkyhgrikaladaaregglef
    

    Sequence, based on observed residues (ATOM records):
    >6yhsK (K:)
    nekkqsrlrrakstrlhiralgatrlcvnrtprhiyaqvisadggkvlaqastldaslrs
    gttgnieaatkvgaliaerakaagvtkvafdrsgfkyhgrikaladaaregglef
    

  • Chain 'L':
    Sequence, based on SEQRES records:
    >6yhsL (L:)
    msgkhplvqaiensqlktdlpefapgdtvvvqvkvkegdrerlqafegvviakknrglns
    aftvrkissgvgvervfqthspvvakievkrrgdvrraklyylrdlsgkaarireklpar
    ka
    

    Sequence, based on observed residues (ATOM records):
    >6yhsL (L:)
    sgkhplvqaiensqlktdlpefapgdtvvvqvkvkegdrerlqafegvviakknrglnsa
    ftvrkissgvgvervfqthspvvakievkrrgdvrraklyylrdlsgkaarireklp
    

  • Chain 'M':
    Sequence, based on SEQRES records:
    >6yhsM (M:)
    marvkrgvvahrrhkkilarakgyygarsrvyrvafqavikagqyayrdrrqkkrqfral
    wiarinagarqnglsysrmidglkkaqviidrrvladiamhdavafaalaekakgalaa
    

    Sequence, based on observed residues (ATOM records):
    >6yhsM (M:)
    arvkrgvvahrrhkkilarakgyygarsrvyrvafqavikagqyayrdrrqkkrqfralw
    iarinagarqnglsysrmidglkkaqviidrrvladiamhdavafaalaekakgala
    

  • Chain 'N':
    Sequence; same for both SEQRES and ATOM records:
    >6yhsN (N:)
    myaviqsggkqhrvvegetlkvellkaesgatitfddvlmvvngdniqigapvvagakvt
    aevighgrhdkiriikmrrrkhyrkqqghrqwftelkitgisg
    

  • Chain 'O':
    Sequence, based on SEQRES records:
    >6yhsO (O:)
    mmevtaklrgaaisaqkarlvadlirgksvahalnilnfsnkkaavlvkkalesaianae
    hnnsldvddlkvstiyvdegmslkrimprakgradritkrtchitvkvgv
    

    Sequence, based on observed residues (ATOM records):
    >6yhsO (O:)
    mevtaklrgaaisaqkarlvadlirgksvahalnilnfsnkkaavlvkkalesaianaeh
    nnsldvddlkvstiyvdegmslkrimprakgradritkrtchitvkvgv
    

  • Chain 'P':
    Sequence, based on SEQRES records:
    >6yhsP (P:)
    mnneriyqvlkgpvfsekaqvlgdtagvqvfkvdinatkleikkaveklfgvevvkvntt
    itkgktkrfgrtlgrrsdvkkayvtlkagqdvemadlgdtaesaae
    

    Sequence, based on observed residues (ATOM records):
    >6yhsP (P:)
    mnneriyqvlkgpvfsekaqvlgdtagvqvfkvdinatkleikkaveklfgvevvkvntt
    itkgktkrfgrtlgrrsdvkkayvtlkagqdv
    

  • Chain 'Q':
    Sequence, based on SEQRES records:
    >6yhsQ (Q:)
    makikkgdqviviagkekgkqgtvlsvsedrvkveglnlvkkhqkpnrvtgaeggivtqe
    aslhisnvailnattqkadrvgyqvidgvktrvykstgesvavak
    

    Sequence, based on observed residues (ATOM records):
    >6yhsQ (Q:)
    akikkgdqviviagkekgkqgtvlsvsedrvkveglnlvkkhqkpnrvtgaeggivtqea
    slhisnvailnattqkadrvgyqvidgvktrvykstgesvav
    

  • Chain 'R':
    Sequence, based on SEQRES records:
    >6yhsR (R:)
    manfvlnaqaraedkqgkgasrrlrreslvpaiiyggnaepvavtlelrelvkalesnaf
    feevveikvgdkvenvkiqalqrhpakntpmhadfkra
    

    Sequence, based on observed residues (ATOM records):
    >6yhsR (R:)
    nfvlnaqaraedkqgkgasrrlrreslvpaiiyggnaepvavtlelrelvkalesnaffe
    evveikvgdkvenvkiqalqrhpakntpmhadfkra
    

  • Chain 'S':
    Sequence, based on SEQRES records:
    >6yhsS (S:)
    matkkaggstkngrdsnpkmlgvkvyggqtvtagniivrqrgtefhaganvgmgrdhtlf
    atadgvvkfevkgqfgrryvkvetv
    

    Sequence, based on observed residues (ATOM records):
    >6yhsS (S:)
    stkngrdsnpkmlgvkvyggqtvtagniivrqrgtefhaganvgmgrdhtlfatadgvvk
    fevkgqfgrryvkvet
    

  • Chain 'T':
    Sequence, based on SEQRES records:
    >6yhsT (T:)
    mskvcqvtgkrpvvgnnvshannktkrrfepnlhhhrfwlesekrfvrlrlttkgmriid
    klgiekvvadlraqgqki
    

    Sequence, based on observed residues (ATOM records):
    >6yhsT (T:)
    skvcqvtgkrpvvgnnvshannktkrrfepnlhhhrfwlesekrfvrlrlttkgmriidk
    lgiekvvadlraqgqki
    

  • Chain 'U':
    Sequence, based on SEQRES records:
    >6yhsU (U:)
    mktkdlreksveelkalldeqqlnqfrlrmakatgqlgkshevqvarktiariktlltek
    qgngq
    

    Sequence, based on observed residues (ATOM records):
    >6yhsU (U:)
    ktkdlreksveelkalldeqqlnqfrlrmakatgqlgkshevqvarktiariktlltekq
    g
    

  • Chain 'V':
    Sequence, based on SEQRES records:
    >6yhsV (V:)
    mktikvtqtkssshrlknhklclqglglrrightvevqdtpsnrgminkvyymvsvee
    

    Sequence, based on observed residues (ATOM records):
    >6yhsV (V:)
    mktikvtqtkssshrlknhklclqglglrrightvevqdtpsnrgminkvyymvsve
    

  • Chain 'X':
    Sequence, based on SEQRES records:
    >6yhsX (X:)
    mavqqnrksrsrrdmrrshdaltenaltvdqatgethrrhhvtkdgfyrgrqlfakaada
    e
    

    Sequence, based on observed residues (ATOM records):
    >6yhsX (X:)
    avqqnrksrsrrdmrrshdaltenaltvdqatgethrrhhvtkdgfyrgrqlfa
    

  • Chain 'Y':
    Sequence; same for both SEQRES and ATOM records:
    >6yhsY (Y:)
    mrdkirlvssagtgyfytttknkrtmpekmeikkfdpkirqhvifkeakik
    

  • Chain 'Z':
    Sequence; same for both SEQRES and ATOM records:
    >6yhsZ (Z:)
    mkrtfqpselkrkrvhgfrarmatkagrqvlarrrakgrhsltv
    

  • Chain 'a':
    Sequence, based on SEQRES records:
    >6yhsa (a:)
    maklktrrgaakrfkatangfkrkqafkrhiltkksakrirqlrgcvmvhvsdvasvrrm
    cpyi
    

    Sequence, based on observed residues (ATOM records):
    >6yhsa (a:)
    aklktrrgaakrfkatangfkrkqafkrhiltkksakrirqlrgcvmvhvsdvasvrrmc
    pyi
    

  • Chain 'b':
    Sequence; same for both SEQRES and ATOM records:
    >6yhsb (b:)
    mkvqasvkkicgsckvirrngvirvicsaeprhkqrqg