PDB entry 6yeh

View 6yeh on RCSB PDB site
Description: Arabidopsis thaliana glutamate dehydrogenase isoform 1 in apo form
Class: oxidoreductase
Keywords: glutamate dehydrogenase, 2-oxoglutarate, NAD, amino acid metabolism, OXIDOREDUCTASE
Deposited on 2020-03-24, released 2020-05-20
The last revision prior to the SCOPe 2.08 freeze date was dated 2020-07-22, with a file datestamp of 2020-07-17.
Experiment type: XRAY
Resolution: 2.59 Å
R-factor: N/A
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Glutamate Dehydrogenase 1
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: GDH1, At5g18170, MRG7.13
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6yeha1, d6yeha2
  • Chain 'B':
    Compound: Glutamate Dehydrogenase 1
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: GDH1, At5g18170, MRG7.13
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6yehb1, d6yehb2
  • Chain 'C':
    Compound: Glutamate Dehydrogenase 1
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: GDH1, At5g18170, MRG7.13
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6yehc1, d6yehc2
  • Chain 'D':
    Compound: Glutamate Dehydrogenase 1
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: GDH1, At5g18170, MRG7.13
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6yehd1, d6yehd2
  • Chain 'E':
    Compound: Glutamate Dehydrogenase 1
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: GDH1, At5g18170, MRG7.13
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6yehe1, d6yehe2
  • Chain 'F':
    Compound: Glutamate Dehydrogenase 1
    Species: Arabidopsis thaliana [TaxId:3702]
    Gene: GDH1, At5g18170, MRG7.13
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d6yehf1, d6yehf2
  • Heterogens: K, MPD, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6yehA (A:)
snamnalaatnrnfklaarllgldskleksllipfreikvectipkddgtlasfvgfrvq
hdnargpmkggiryhpevdpdevnalaqlmtwktavakipyggakggigcdpsklsisel
erltrvftqkihdligihtdvpapdmgtgpqtmawildeyskfhgyspavvtgkpidlgg
slgrdaatgrgvmfgteallnehgktisgqrfviqgfgnvgswaaklisekggkivavsd
itgaiknkdgidipallkhtkehrgvkgfdgadpidpnsilvedcdilvpaalggvinre
naneikakfiieaanhptdpdadeilskkgvvilpdiyansggvtvsyfewvqniqgfmw
eeekvndelktymtrsfkdlkemckthscdlrmgaftlgvnrvaqatilrgwga

    Sequence, based on observed residues (ATOM records): (download) 
    >6yehA (A:)
nalaatnrnfklaarllgldskleksllipfreikvectipkddgtlasfvgfrvqhdna
rgpmkggiryhpevdpdevnalaqlmtwktavakipyggakggigcdpsklsiselerlt
rvftqkihdligihtdvpapdmgtgpqtmawildeyskfhgyspavvtgkpidlggslgr
daatgrgvmfgteallnehgktisgqrfviqgfgnvgswaaklisekggkivavsditga
iknkdgidipallkhtkehrgvkgfdgadpidpnsilvedcdilvpaalggvinrenane
ikakfiieaanhptdpdadeilskkgvvilpdiyansggvtvsyfewvqniqgfmweeek
vndelktymtrsfkdlkemckthscdlrmgaftlgvnrvaqatilrgwga

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >6yehB (B:)
snamnalaatnrnfklaarllgldskleksllipfreikvectipkddgtlasfvgfrvq
hdnargpmkggiryhpevdpdevnalaqlmtwktavakipyggakggigcdpsklsisel
erltrvftqkihdligihtdvpapdmgtgpqtmawildeyskfhgyspavvtgkpidlgg
slgrdaatgrgvmfgteallnehgktisgqrfviqgfgnvgswaaklisekggkivavsd
itgaiknkdgidipallkhtkehrgvkgfdgadpidpnsilvedcdilvpaalggvinre
naneikakfiieaanhptdpdadeilskkgvvilpdiyansggvtvsyfewvqniqgfmw
eeekvndelktymtrsfkdlkemckthscdlrmgaftlgvnrvaqatilrgwga

    Sequence, based on observed residues (ATOM records): (download) 
    >6yehB (B:)
alaatnrnfklaarllgldskleksllipfreikvectipkddgtlasfvgfrvqhdnar
gpmkggiryhpevdpdevnalaqlmtwktavakipyggakggigcdpsklsiselerltr
vftqkihdligihtdvpapdmgtgpqtmawildeyskfhgyspavvtgkpidlggslgrd
aatgrgvmfgteallnehgktisgqrfviqgfgnvgswaaklisekggkivavsditgai
knkdgidipallkhtkehrgvkgfdgadpidpnsilvedcdilvpaalggvinrenanei
kakfiieaanhptdpdadeilskkgvvilpdiyansggvtvsyfewvqniqgfmweeekv
ndelktymtrsfkdlkemckthscdlrmgaftlgvnrvaqatilrgwga

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >6yehC (C:)
snamnalaatnrnfklaarllgldskleksllipfreikvectipkddgtlasfvgfrvq
hdnargpmkggiryhpevdpdevnalaqlmtwktavakipyggakggigcdpsklsisel
erltrvftqkihdligihtdvpapdmgtgpqtmawildeyskfhgyspavvtgkpidlgg
slgrdaatgrgvmfgteallnehgktisgqrfviqgfgnvgswaaklisekggkivavsd
itgaiknkdgidipallkhtkehrgvkgfdgadpidpnsilvedcdilvpaalggvinre
naneikakfiieaanhptdpdadeilskkgvvilpdiyansggvtvsyfewvqniqgfmw
eeekvndelktymtrsfkdlkemckthscdlrmgaftlgvnrvaqatilrgwga

    Sequence, based on observed residues (ATOM records): (download) 
    >6yehC (C:)
laatnrnfklaarllgldskleksllipfreikvectipkddgtlasfvgfrvqhdnarg
pmkggiryhpevdpdevnalaqlmtwktavakipyggakggigcdpsklsiselerltrv
ftqkihdligihtdvpapdmgtgpqtmawildeyskfhgyspavvtgkpidlggslgrda
atgrgvmfgteallnehgktisgqrfviqgfgnvgswaaklisekggkivavsditgaik
nkdgidipallkhtkehrgvkgfdgadpidpnsilvedcdilvpaalggvinrenaneik
akfiieaanhptdpdadeilskkgvvilpdiyansggvtvsyfewvqniqgfmweeekvn
delktymtrsfkdlkemckthscdlrmgaftlgvnrvaqatilrgwga

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >6yehD (D:)
snamnalaatnrnfklaarllgldskleksllipfreikvectipkddgtlasfvgfrvq
hdnargpmkggiryhpevdpdevnalaqlmtwktavakipyggakggigcdpsklsisel
erltrvftqkihdligihtdvpapdmgtgpqtmawildeyskfhgyspavvtgkpidlgg
slgrdaatgrgvmfgteallnehgktisgqrfviqgfgnvgswaaklisekggkivavsd
itgaiknkdgidipallkhtkehrgvkgfdgadpidpnsilvedcdilvpaalggvinre
naneikakfiieaanhptdpdadeilskkgvvilpdiyansggvtvsyfewvqniqgfmw
eeekvndelktymtrsfkdlkemckthscdlrmgaftlgvnrvaqatilrgwga

    Sequence, based on observed residues (ATOM records): (download) 
    >6yehD (D:)
nalaatnrnfklaarllgldskleksllipfreikvectipkddgtlasfvgfrvqhdna
rgpmkggiryhpevdpdevnalaqlmtwktavakipyggakggigcdpsklsiselerlt
rvftqkihdligihtdvpapdmgtgpqtmawildeyskfhgyspavvtgkpidlggslgr
daatgrgvmfgteallnehgktisgqrfviqgfgnvgswaaklisekggkivavsditga
iknkdgidipallkhtkehrgvkgfdgadpidpnsilvedcdilvpaalggvinrenane
ikakfiieaanhptdpdadeilskkgvvilpdiyansggvtvsyfewvqniqgfmweeek
vndelktymtrsfkdlkemckthscdlrmgaftlgvnrvaqatilrgwga

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >6yehE (E:)
snamnalaatnrnfklaarllgldskleksllipfreikvectipkddgtlasfvgfrvq
hdnargpmkggiryhpevdpdevnalaqlmtwktavakipyggakggigcdpsklsisel
erltrvftqkihdligihtdvpapdmgtgpqtmawildeyskfhgyspavvtgkpidlgg
slgrdaatgrgvmfgteallnehgktisgqrfviqgfgnvgswaaklisekggkivavsd
itgaiknkdgidipallkhtkehrgvkgfdgadpidpnsilvedcdilvpaalggvinre
naneikakfiieaanhptdpdadeilskkgvvilpdiyansggvtvsyfewvqniqgfmw
eeekvndelktymtrsfkdlkemckthscdlrmgaftlgvnrvaqatilrgwga

    Sequence, based on observed residues (ATOM records): (download) 
    >6yehE (E:)
nalaatnrnfklaarllgldskleksllipfreikvectipkddgtlasfvgfrvqhdna
rgpmkggiryhpevdpdevnalaqlmtwktavakipyggakggigcdpsklsiselerlt
rvftqkihdligihtdvpapdmgtgpqtmawildeyskfhgyspavvtgkpidlggslgr
daatgrgvmfgteallnehgktisgqrfviqgfgnvgswaaklisekggkivavsditga
iknkdgidipallkhtkehrgvkgfdgadpidpnsilvedcdilvpaalggvinrenane
ikakfiieaanhptdpdadeilskkgvvilpdiyansggvtvsyfewvqniqgfmweeek
vndelktymtrsfkdlkemckthscdlrmgaftlgvnrvaqatilrgwga

  • Chain 'F':
    Sequence, based on SEQRES records: (download) 
    >6yehF (F:)
snamnalaatnrnfklaarllgldskleksllipfreikvectipkddgtlasfvgfrvq
hdnargpmkggiryhpevdpdevnalaqlmtwktavakipyggakggigcdpsklsisel
erltrvftqkihdligihtdvpapdmgtgpqtmawildeyskfhgyspavvtgkpidlgg
slgrdaatgrgvmfgteallnehgktisgqrfviqgfgnvgswaaklisekggkivavsd
itgaiknkdgidipallkhtkehrgvkgfdgadpidpnsilvedcdilvpaalggvinre
naneikakfiieaanhptdpdadeilskkgvvilpdiyansggvtvsyfewvqniqgfmw
eeekvndelktymtrsfkdlkemckthscdlrmgaftlgvnrvaqatilrgwga

    Sequence, based on observed residues (ATOM records): (download) 
    >6yehF (F:)
laatnrnfklaarllgldskleksllipfreikvectipkddgtlasfvgfrvqhdnarg
pmkggiryhpevdpdevnalaqlmtwktavakipyggakggigcdpsklsiselerltrv
ftqkihdligihtdvpapdmgtgpqtmawildeyskfhgyspavvtgkpidlggslgrda
atgrgvmfgteallnehgktisgqrfviqgfgnvgswaaklisekggkivavsditgaik
nkdgidipallkhtkehrgvkgfdgadpidpnsilvedcdilvpaalggvinrenaneik
akfiieaanhptdpdadeilskkgvvilpdiyansggvtvsyfewvqniqgfmweeekvn
delktymtrsfkdlkemckthscdlrmgaftlgvnrvaqatilrgwga