PDB entry 6ycp

View 6ycp on RCSB PDB site
Description: Crystal structure of GcoA F169V bound to o-vanillin
Class: oxidoreductase
Keywords: Aromatic catabolism, cytochrome P450, lignin valorization, protein engineering, OXIDOREDUCTASE
Deposited on 2020-03-18, released 2021-02-17
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-02-17, with a file datestamp of 2021-02-12.
Experiment type: XRAY
Resolution: 1.8 Å
R-factor: N/A
AEROSPACI score: 0.45 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Aromatic O-demethylase, cytochrome P450 subunit
    Species: Amycolatopsis sp. (strain ATCC 39116 / 75iv2) [TaxId:385957]
    Gene: gcoA
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0DPQ7 (Start-408)
      • engineered mutation (170)
    Domains in SCOPe 2.08: d6ycpa_
  • Heterogens: OKE, HEM, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6ycpA (A:)
gpmttterpdlawldevtmtqlernpyevyerlraeaplafvpvlgsyvastaevcreva
tspdfeavitpaggrtfghpaiigvngdihadlrsmvepalqpaevdrwiddlvrpiarr
ylerfendghaelvaqycepvsvrslgdllglqevdsdklrewfaklnrsvtnaavdeng
efanpegfaegdqakaeiravvdplidkwiehpddsaishwlhdgmppgqtrdreyiypt
iyvyllgamqepghgmastlvglfsrpeqleevvddptlipraiaeglrwtspiwsatar
istkpvtiagvdlpagtpvmlsygsanhdtgkyeapsqydlhrpplphlafgagnhacag
iyfanhvmrialeelfeaipnlerdtregvefwgwgfrgptslhvtwev

    Sequence, based on observed residues (ATOM records): (download) 
    >6ycpA (A:)
erpdlawldevtmtqlernpyevyerlraeaplafvpvlgsyvastaevcrevatspdfe
avitpaggrtfghpaiigvngdihadlrsmvepalqpaevdrwiddlvrpiarrylerfe
ndghaelvaqycepvsvrslgdllglqevdsdklrewfaklnrsvtnaavdengefanpe
gfaegdqakaeiravvdplidkwiehpddsaishwlhdgmppgqtrdreyiyptiyvyll
gamqepghgmastlvglfsrpeqleevvddptlipraiaeglrwtspiwsataristkpv
tiagvdlpagtpvmlsygsanhdtgkyeapsqydlhrpplphlafgagnhacagiyfanh
vmrialeelfeaipnlerdtregvefwgwgfrgptslhvtwev