PDB entry 6ycm

View 6ycm on RCSB PDB site
Description: Crystal structure of GcoA T296S bound to p-vanillin
Class: oxidoreductase
Keywords: Aromatic catabolism, cytochrome P450, lignin valorization, protein engineering, OXIDOREDUCTASE
Deposited on 2020-03-18, released 2021-02-17
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-02-17, with a file datestamp of 2021-02-12.
Experiment type: XRAY
Resolution: 1.6 Å
R-factor: N/A
AEROSPACI score: 0.52 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Aromatic O-demethylase, cytochrome P450 subunit
    Species: Amycolatopsis sp. (strain ATCC 39116 / 75iv2) [TaxId:385957]
    Gene: gcoA
    Database cross-references and differences (RAF-indexed):
    • Uniprot P0DPQ7
      • conflict (297)
    Domains in SCOPe 2.08: d6ycma_
  • Heterogens: V55, HEM, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >6ycmA (A:)
gpmttterpdlawldevtmtqlernpyevyerlraeaplafvpvlgsyvastaevcreva
tspdfeavitpaggrtfghpaiigvngdihadlrsmvepalqpaevdrwiddlvrpiarr
ylerfendghaelvaqycepvsvrslgdllglqevdsdklrewfaklnrsftnaavdeng
efanpegfaegdqakaeiravvdplidkwiehpddsaishwlhdgmppgqtrdreyiypt
iyvyllgamqepghgmastlvglfsrpeqleevvddptlipraiaeglrwtspiwsasar
istkpvtiagvdlpagtpvmlsygsanhdtgkyeapsqydlhrpplphlafgagnhacag
iyfanhvmrialeelfeaipnlerdtregvefwgwgfrgptslhvtwev

    Sequence, based on observed residues (ATOM records): (download) 
    >6ycmA (A:)
erpdlawldevtmtqlernpyevyerlraeaplafvpvlgsyvastaevcrevatspdfe
avitpaggrtfghpaiigvngdihadlrsmvepalqpaevdrwiddlvrpiarrylerfe
ndghaelvaqycepvsvrslgdllglqevdsdklrewfaklnrsftnaavdengefanpe
gfaegdqakaeiravvdplidkwiehpddsaishwlhdgmppgqtrdreyiyptiyvyll
gamqepghgmastlvglfsrpeqleevvddptlipraiaeglrwtspiwsasaristkpv
tiagvdlpagtpvmlsygsanhdtgkyeapsqydlhrpplphlafgagnhacagiyfanh
vmrialeelfeaipnlerdtregvefwgwgfrgptslhvtwe