PDB entry 6ybh
View 6ybh on RCSB PDB site
Description: Deoxyribonucleoside Kinase
Class: transferase
Keywords: Transferase
Deposited on
2020-03-17, released
2021-03-31
The last revision prior to the SCOPe 2.07 freeze date was dated
2021-03-31, with a file datestamp of
2021-03-26.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: N/A
AEROSPACI score: 0.29
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: deoxynucleoside kinase
Species: Drosophila melanogaster [TaxId:7227]
Gene: dnk, CG5452
Database cross-references and differences (RAF-indexed):
- Uniprot Q9XZT6 (1-End)
- initiating methionine (0)
- engineered mutation (7)
- engineered mutation (11)
- engineered mutation (33)
- engineered mutation (69)
- engineered mutation (79)
- engineered mutation (82)
- engineered mutation (88)
- engineered mutation (111)
- engineered mutation (133)
- engineered mutation (154)
- engineered mutation (156)
- engineered mutation (158)
- engineered mutation (161-162)
- engineered mutation (166)
- engineered mutation (170)
- engineered mutation (173)
- Chain 'B':
Compound: deoxynucleoside kinase
Species: Drosophila melanogaster [TaxId:7227]
Gene: dnk, CG5452
Database cross-references and differences (RAF-indexed):
- Uniprot Q9XZT6 (1-End)
- initiating methionine (0)
- engineered mutation (7)
- engineered mutation (11)
- engineered mutation (33)
- engineered mutation (69)
- engineered mutation (79)
- engineered mutation (82)
- engineered mutation (88)
- engineered mutation (111)
- engineered mutation (133)
- engineered mutation (154)
- engineered mutation (156)
- engineered mutation (158)
- engineered mutation (161-162)
- engineered mutation (166)
- engineered mutation (170)
- engineered mutation (173)
Domains in SCOPe 2.07: d6ybhb_ - Chain 'C':
Compound: deoxynucleoside kinase
Species: Drosophila melanogaster [TaxId:7227]
Gene: dnk, CG5452
Database cross-references and differences (RAF-indexed):
- Uniprot Q9XZT6 (1-End)
- initiating methionine (0)
- engineered mutation (7)
- engineered mutation (11)
- engineered mutation (33)
- engineered mutation (69)
- engineered mutation (79)
- engineered mutation (82)
- engineered mutation (88)
- engineered mutation (111)
- engineered mutation (133)
- engineered mutation (154)
- engineered mutation (162)
- engineered mutation (166)
- engineered mutation (170)
- engineered mutation (173)
- Chain 'D':
Compound: deoxynucleoside kinase
Species: Drosophila melanogaster [TaxId:7227]
Gene: dnk, CG5452
Database cross-references and differences (RAF-indexed):
- Uniprot Q9XZT6 (1-End)
- initiating methionine (0)
- engineered mutation (7)
- engineered mutation (11)
- engineered mutation (33)
- engineered mutation (69)
- engineered mutation (79)
- engineered mutation (82)
- engineered mutation (88)
- engineered mutation (111)
- engineered mutation (133)
- engineered mutation (154)
- engineered mutation (156)
- engineered mutation (158)
- engineered mutation (161-162)
- engineered mutation (166)
- engineered mutation (170)
- engineered mutation (173)
- Chain 'E':
Compound: deoxynucleoside kinase
Species: Drosophila melanogaster [TaxId:7227]
Gene: dnk, CG5452
Database cross-references and differences (RAF-indexed):
- Uniprot Q9XZT6 (1-End)
- initiating methionine (0)
- engineered mutation (7)
- engineered mutation (11)
- engineered mutation (33)
- engineered mutation (69)
- engineered mutation (79)
- engineered mutation (82)
- engineered mutation (88)
- engineered mutation (111)
- engineered mutation (133)
- engineered mutation (154)
- engineered mutation (156)
- engineered mutation (158)
- engineered mutation (161-162)
- engineered mutation (166)
- engineered mutation (170)
- engineered mutation (173)
Domains in SCOPe 2.07: d6ybhe_ - Chain 'F':
Compound: deoxynucleoside kinase
Species: Drosophila melanogaster [TaxId:7227]
Gene: dnk, CG5452
Database cross-references and differences (RAF-indexed):
- Uniprot Q9XZT6 (1-End)
- initiating methionine (0)
- engineered mutation (7)
- engineered mutation (11)
- engineered mutation (33)
- engineered mutation (69)
- engineered mutation (79)
- engineered mutation (82)
- engineered mutation (88)
- engineered mutation (111)
- engineered mutation (133)
- engineered mutation (154)
- engineered mutation (156)
- engineered mutation (158)
- engineered mutation (161)
- engineered mutation (166)
- engineered mutation (170)
- engineered mutation (173)
- Heterogens: 4PC, GOL, SO4, HOH
PDB Chain Sequences:
- Chain 'A':
No sequence available.
- Chain 'B':
Sequence, based on SEQRES records: (download)
>6ybhB (B:)
mkyaegtrpftiliegnigsgkttylnhfekykddiclltepvekwrnvngvnllelmyk
dpkkwampfvsyvtltmlqmhtqptnkkvkimersifsarycfvenmrrngwleqgmynt
leewykfieesihiqadliiylrtspevayerirkrgrpeeknvpleylqqlhqlhedwl
ihqrrpqsckvlvldadlnlenigteyqrsessifdaissnqqp
Sequence, based on observed residues (ATOM records): (download)
>6ybhB (B:)
mkyaegtrpftiliegnigsgkttylnhfekykddiclltepvekwrnvngvnllelmyk
dpkkwampfvsyvtltmlqmhtqptnkkvkimersifsarycfvenmrrngwleqgmynt
leewykfieesihiqadliiylrtspevayerirkrgrpeeknvpleylqqlhqlhedwl
ihqrrpqsckvlvldadlnlenigteyqrsessif
- Chain 'C':
No sequence available.
- Chain 'D':
No sequence available.
- Chain 'E':
Sequence, based on SEQRES records: (download)
>6ybhE (E:)
mkyaegtrpftiliegnigsgkttylnhfekykddiclltepvekwrnvngvnllelmyk
dpkkwampfvsyvtltmlqmhtqptnkkvkimersifsarycfvenmrrngwleqgmynt
leewykfieesihiqadliiylrtspevayerirkrgrpeeknvpleylqqlhqlhedwl
ihqrrpqsckvlvldadlnlenigteyqrsessifdaissnqqp
Sequence, based on observed residues (ATOM records): (download)
>6ybhE (E:)
mkyaegtrpftiliegnigsgkttylnhfekykddiclltepvekwrnvngvnllelmyk
dpkkwampfvsyvtltmlqmhtqptnkkvkimersifsarycfvenmrrngwleqgmynt
leewykfieesihiqadliiylrtspevayerirkrgrpeeknvpleylqqlhqlhedwl
ihqrrpqsckvlvldadlnlenigteyqr
- Chain 'F':
No sequence available.