SCOPe 2.08: Structural Classification of Proteins

PDB entry 6ybh

View 6ybh on RCSB PDB site
Description: Deoxyribonucleoside Kinase
Class: transferase
Keywords: Transferase
Deposited on 2020-03-17, released 2021-03-31
The last revision prior to the SCOPe 2.08 freeze date was dated 2021-03-31, with a file datestamp of 2021-03-26.
Experiment type: XRAY
Resolution: 2.4 Å
R-factor: N/A
AEROSPACI score: 0.29 (click here for full SPACI score report)

Chains and heterogens:

Chain 'A':
Compound: deoxynucleoside kinase
Species: Drosophila melanogaster [TaxId:7227]
Gene: dnk, CG5452
Database cross-references and differences (RAF-indexed):
- Uniprot Q9XZT6 (1-End)
  - initiating methionine (0)
  - engineered mutation (7)
  - engineered mutation (11)
  - engineered mutation (33)
  - engineered mutation (69)
  - engineered mutation (79)
  - engineered mutation (82)
  - engineered mutation (88)
  - engineered mutation (111)
  - engineered mutation (133)
  - engineered mutation (154)
  - engineered mutation (156)
  - engineered mutation (158)
  - engineered mutation (161-162)
  - engineered mutation (166)
  - engineered mutation (170)
  - engineered mutation (173)
Domains in SCOPe 2.08: d6ybha_
Chain 'B':
Compound: deoxynucleoside kinase
Species: Drosophila melanogaster [TaxId:7227]
Gene: dnk, CG5452
Database cross-references and differences (RAF-indexed):
- Uniprot Q9XZT6 (1-End)
  - initiating methionine (0)
  - engineered mutation (7)
  - engineered mutation (11)
  - engineered mutation (33)
  - engineered mutation (69)
  - engineered mutation (79)
  - engineered mutation (82)
  - engineered mutation (88)
  - engineered mutation (111)
  - engineered mutation (133)
  - engineered mutation (154)
  - engineered mutation (156)
  - engineered mutation (158)
  - engineered mutation (161-162)
  - engineered mutation (166)
  - engineered mutation (170)
  - engineered mutation (173)
Domains in SCOPe 2.08: d6ybhb_
Chain 'C':
Compound: deoxynucleoside kinase
Species: Drosophila melanogaster [TaxId:7227]
Gene: dnk, CG5452
Database cross-references and differences (RAF-indexed):
- Uniprot Q9XZT6 (1-End)
  - initiating methionine (0)
  - engineered mutation (7)
  - engineered mutation (11)
  - engineered mutation (33)
  - engineered mutation (69)
  - engineered mutation (79)
  - engineered mutation (82)
  - engineered mutation (88)
  - engineered mutation (111)
  - engineered mutation (133)
  - engineered mutation (154)
  - engineered mutation (162)
  - engineered mutation (166)
  - engineered mutation (170)
  - engineered mutation (173)
Domains in SCOPe 2.08: d6ybhc_
Chain 'D':
Compound: deoxynucleoside kinase
Species: Drosophila melanogaster [TaxId:7227]
Gene: dnk, CG5452
Database cross-references and differences (RAF-indexed):
- Uniprot Q9XZT6 (1-End)
  - initiating methionine (0)
  - engineered mutation (7)
  - engineered mutation (11)
  - engineered mutation (33)
  - engineered mutation (69)
  - engineered mutation (79)
  - engineered mutation (82)
  - engineered mutation (88)
  - engineered mutation (111)
  - engineered mutation (133)
  - engineered mutation (154)
  - engineered mutation (156)
  - engineered mutation (158)
  - engineered mutation (161-162)
  - engineered mutation (166)
  - engineered mutation (170)
  - engineered mutation (173)
Domains in SCOPe 2.08: d6ybhd_
Chain 'E':
Compound: deoxynucleoside kinase
Species: Drosophila melanogaster [TaxId:7227]
Gene: dnk, CG5452
Database cross-references and differences (RAF-indexed):
- Uniprot Q9XZT6 (1-End)
  - initiating methionine (0)
  - engineered mutation (7)
  - engineered mutation (11)
  - engineered mutation (33)
  - engineered mutation (69)
  - engineered mutation (79)
  - engineered mutation (82)
  - engineered mutation (88)
  - engineered mutation (111)
  - engineered mutation (133)
  - engineered mutation (154)
  - engineered mutation (156)
  - engineered mutation (158)
  - engineered mutation (161-162)
  - engineered mutation (166)
  - engineered mutation (170)
  - engineered mutation (173)
Domains in SCOPe 2.08: d6ybhe_
Chain 'F':
Compound: deoxynucleoside kinase
Species: Drosophila melanogaster [TaxId:7227]
Gene: dnk, CG5452
Database cross-references and differences (RAF-indexed):
- Uniprot Q9XZT6 (1-End)
  - initiating methionine (0)
  - engineered mutation (7)
  - engineered mutation (11)
  - engineered mutation (33)
  - engineered mutation (69)
  - engineered mutation (79)
  - engineered mutation (82)
  - engineered mutation (88)
  - engineered mutation (111)
  - engineered mutation (133)
  - engineered mutation (154)
  - engineered mutation (156)
  - engineered mutation (158)
  - engineered mutation (161)
  - engineered mutation (166)
  - engineered mutation (170)
  - engineered mutation (173)
Domains in SCOPe 2.08: d6ybhf_
Heterogens: 4PC, GOL, SO4, HOH

PDB Chain Sequences:

Chain 'A':
Sequence, based on SEQRES records: (download)

>6ybhA (A:)
mkyaegtrpftiliegnigsgkttylnhfekykddiclltepvekwrnvngvnllelmyk
dpkkwampfvsyvtltmlqmhtqptnkkvkimersifsarycfvenmrrngwleqgmynt
leewykfieesihiqadliiylrtspevayerirkrgrpeeknvpleylqqlhqlhedwl
ihqrrpqsckvlvldadlnlenigteyqrsessifdaissnqqp