PDB entry 6yae

View 6yae on RCSB PDB site
Description: ap2 core in physiological buffer
Deposited on 2020-03-12, released 2020-07-29
The last revision was dated 2020-08-19, with a file datestamp of 2020-08-14.
Experiment type: EM
Resolution: 3.9 Å
R-factor: N/A
AEROSPACI score: 0.12 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: AP-2 complex subunit alpha
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Ap2a2
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: ap-2 complex subunit beta
    Species: Homo sapiens [TaxId:9606]
    Gene: AP2B1, ADTB2, CLAPB1
    Database cross-references and differences (RAF-indexed):
  • Chain 'M':
    Compound: ap-2 complex subunit mu
    Species: Rattus norvegicus [TaxId:10116]
    Gene: Ap2m1
    Database cross-references and differences (RAF-indexed):
  • Chain 'S':
    Compound: ap-2 complex subunit sigma
    Species: Mus musculus [TaxId:10090]
    Gene: Ap2s1, Ap17, Claps2
    Database cross-references and differences (RAF-indexed):

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6yaeA (A:)
    mpavskgegmrglavfisdirnckskeaeikrinkelanirskfkgdkaldgyskkkyvc
    kllfifllghdidfghmeavnllssnrytekqigylfisvlvnsnselirlinnaikndl
    asrnptfmglalhcianvgsremaeafageipkilvagdtmdsvkqsaalcllrlyrtsp
    dlvpmgdwtsrvvhllndqhlgvvtaatslittlaqknpeefktsvslavsrlsrivtsa
    stdlqdytyyfvpapwlsvkllrllqcypppedpavrgrltecletilnkaqeppkskkv
    qhsnaknavlfeaisliihhdsepnllvracnqlgqflqhretnlrylalesmctlasse
    fsheavkthietvinalkterdvsvrqravdllyamcdrsnaqqivaemlsyletadysi
    reeivlkvailaekyavdytwyvdtilnliriagdyvseevwyrviqivinrddvqgyaa
    ktvfealqapachenlvkvggyilgefgnliagdprsspliqfnllhskfhlcsvptral
    llstyikfvnlfpevkatiqdvlrsdsqlknadvelqqraveylrlstvastdilatvle
    emppfperessilaklkkkkg
    

    Sequence, based on observed residues (ATOM records):
    >6yaeA (A:)
    gmrglavfisdirnckskeaeikrinkelanirskfkgdkaldgyskkkyvckllfifll
    ghdidfghmeavnllssnrytekqigylfisvlvnsnselirlinnaikndlasrnptfm
    glalhcianvgsremaeafageipkilvagdtmdsvkqsaalcllrlyrtspdlvpmgdw
    tsrvvhllndqhlgvvtaatslittlaqknpeefktsvslavsrlsrivtsastdlqdyt
    yyfvpapwlsvkllrllqcypppedpavrgrltecletilnkaqeppkskkvqhsnakna
    vlfeaisliihhdsepnllvracnqlgqflqhretnlrylalesmctlassefsheavkt
    hietvinalkterdvsvrqravdllyamcdrsnaqqivaemlsyletadysireeivlkv
    ailaekyavdytwyvdtilnliriagdyvseevwyrviqivinrddvqgyaaktvfealq
    apachenlvkvggyilgefgnliagdprsspliqfnllhskfhlcsvptralllstyikf
    vnlfpevkatiqdvlrsdsqlknadvelqqraveylrlstvastdilatvleemppfper
    

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6yaeB (B:)
    mtdskyfttnkkgeifelkaelnnekkekrkeavkkviaamtvgkdvsslfpdvvncmqt
    dnlelkklvylylmnyaksqpdmaimavnsfvkdcedpnpliralavrtmgcirvdkite
    ylceplrkclkdedpyvrktaavcvaklhdinaqmvedqgfldslrdliadsnpmvvana
    vaalseiseshpnsnlldlnpqninklltalnectewgqifildclsnynpkddreaqsi
    cervtprlshansavvlsavkvlmkflellpkdsdyynmllkklapplvtllsgepevqy
    valrninlivqkrpeilkqeikvffvkyndpiyvklekldimirlasqaniaqvlaelke
    yatevdvdfvrkavraigrcaikveqsaercvstlldliqtkvnyvvqeaivvirdifrk
    ypnkyesiiatlcenldsldepdaraamiwivgeyaeridnadellesflegfhdestqv
    qltlltaivklflkkpsetqelvqqvlslatqdsdnpdlrdrgyiywrllstdpvtakev
    vlsekpliseetdlieptlldelichigslasvyhkppnafvegshgihrk
    

    Sequence, based on observed residues (ATOM records):
    >6yaeB (B:)
    skyfttnkkgeifelkaelnnekkekrkeavkkviaamtvgkdvsslfpdvvncmqtdnl
    elkklvylylmnyaksqpdmaimavnsfvkdcedpnpliralavrtmgcirvdkiteylc
    eplrkclkdedpyvrktaavcvaklhdinaqmvedqgfldslrdliadsnpmvvanavaa
    lseiseshpnsnlldlnpqninklltalnectewgqifildclsnynpkddreaqsicer
    vtprlshansavvlsavkvlmkflellpkdsdyynmllkklapplvtllsgepevqyval
    rninlivqkrpeilkqeikvffvkyndpiyvklekldimirlasqaniaqvlaelkeyat
    evdvdfvrkavraigrcaikveqsaercvstlldliqtkvnyvvqeaivvirdifrkypn
    kyesiiatlcenldsldepdaraamiwivgeyaeridnadellesflegfhdestqvqlt
    lltaivklflkkpsetqelvqqvlslatqdsdnpdlrdrgyiywrllstdpvtakevvls
    ekpliseetdlieptlldelichigslasvyhkppnafv
    

  • Chain 'M':
    Sequence, based on SEQRES records:
    >6yaeM (M:)
    migglfiynhkgevlisrvyrddigrnavdafrvnviharqqvrspvtniartsffhvkr
    sniwlaavtkqnvnaamvfeflykmcdvmaayfgkiseeniknnfvliyelldeildfgy
    pqnsetgalktfitqqgiksqhqtkeeqsqitsqvtgqigwrregikyrrnelfldvles
    vnllmspqgqvlsahvsgrvvmksylsgmpeckfgmndkiviekqgkgtadetsksgkqs
    iaiddctfhqcvrlskfdsersisfippdgefelmryrttkdiilpfrviplvrevgrtk
    levkvviksnfkpsllaqkievriptplntsgvqvicmkgkakykasenaivwkikrmag
    mkesqisaeiellptndkkkwarppismnfevpfapsglkvrylkvfepklnysdhdvik
    wvryigrsgiyetrc
    

    Sequence, based on observed residues (ATOM records):
    >6yaeM (M:)
    migglfiynhkgevlisrvyrddigrnavdafrvnviharqqvrspvtniartsffhvkr
    sniwlaavtkqnvnaamvfeflykmcdvmaayfgkiseeniknnfvliyelldeildfgy
    pqnsetgalktfitqqgiksqigwrregikyrrnelfldvlesvnllmspqgqvlsahvs
    grvvmksylsgmpeckfgmndkivisiaiddctfhqcvrlsrsisfippdgefelmryrt
    tkdiilpfrviplvrevgrtklevkvviksnfkpsllaqkievriptplntsgvqvicmk
    gkakykasenaivwkikrmagmkesqisaeiellptndkkkwarppismnfevpfapsgl
    kvrylkvfepklnysdhdvikwvryigrsgiyetrc
    

  • Chain 'S':
    Sequence; same for both SEQRES and ATOM records:
    >6yaeS (S:)
    mirfiliqnragktrlakwymqfdddekqklieevhavvtvrdakhtnfvefrnfkiiyr
    ryaglyfcicvdvndnnlayleaihnfvevlneyfhnvceldlvfnfykvytvvdemfla
    geiretsqtkvlkqllmlqsle