PDB entry 6ya2

View 6ya2 on RCSB PDB site
Description: crystal structure of tswv glycoprotein n ectodomain (trypsin treated)
Deposited on 2020-03-11, released 2020-09-30
The last revision was dated 2021-04-14, with a file datestamp of 2021-04-09.
Experiment type: XRAY
Resolution: 2.5 Å
R-factor: N/A
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Glycoprotein
    Species: Tomato spotted wilt virus [TaxId:1933298]
    Gene: Gn, Gc
    Database cross-references and differences (RAF-indexed):
  • Chain 'B':
    Compound: Glycoprotein
    Species: Tomato spotted wilt virus [TaxId:1933298]
    Gene: Gn, Gc
    Database cross-references and differences (RAF-indexed):
  • Chain 'C':
    Compound: Glycoprotein
    Species: Tomato spotted wilt virus [TaxId:1933298]
    Gene: Gn, Gc
    Database cross-references and differences (RAF-indexed):
  • Heterogens: NAG, HOH

PDB Chain Sequences:
This PDB entry is not classified in SCOPe 2.08, so the chain sequences below are not included in the ASTRAL sequence sets.

  • Chain 'A':
    Sequence, based on SEQRES records:
    >6ya2A (A:)
sttqktisvsdlpnnclnasslkceikgistynvyyqvenngviyscvsdsaeglekcdn
slnlpkrfskvpvipitkldnkrhfsvgtkffisesltqdnypitynsyptngtvclqtv
klsgdckitksnfanpytvsitspekimgylikkpgenvehkvisfsgsasitfteemld
gehnllcgdksakipktnk

    Sequence, based on observed residues (ATOM records):
    >6ya2A (A:)
dlpnnclnasslkceikgistynvyyqvenngviyscvsdsaeglekcdnslnlpkrfsk
vpvipitkldnkrhfsvgtkffisesltqdnypitynsyptngtvclqtvklsgdckitk
snfanpytvsitspekimgylikkpgenvehkvisfsgsasitfteemldgehnllcgdk
sakipktn

  • Chain 'B':
    Sequence, based on SEQRES records:
    >6ya2B (B:)
sttqktisvsdlpnnclnasslkceikgistynvyyqvenngviyscvsdsaeglekcdn
slnlpkrfskvpvipitkldnkrhfsvgtkffisesltqdnypitynsyptngtvclqtv
klsgdckitksnfanpytvsitspekimgylikkpgenvehkvisfsgsasitfteemld
gehnllcgdksakipktnk

    Sequence, based on observed residues (ATOM records):
    >6ya2B (B:)
vsdlpnnclnasslkceikgistynvyyqvenngviyscvsdsaeglekcdnslnlpkrf
skvpvipitkldnkrhfsvgtkffisesltqdnypitynsyptngtvclqtvklsgdcki
tksnfanpytvsitspekimgylikkpgenvehkvisfsgsasitfteemldgehnllcg
dksakipktn

  • Chain 'C':
    Sequence, based on SEQRES records:
    >6ya2C (C:)
sttqktisvsdlpnnclnasslkceikgistynvyyqvenngviyscvsdsaeglekcdn
slnlpkrfskvpvipitkldnkrhfsvgtkffisesltqdnypitynsyptngtvclqtv
klsgdckitksnfanpytvsitspekimgylikkpgenvehkvisfsgsasitfteemld
gehnllcgdksakipktnk

    Sequence, based on observed residues (ATOM records):
    >6ya2C (C:)
lpnnclnasslkceikgistynvyyqvenngviyscvsdsaeglekcdnslnlpkrfskv
pvipitkldnkrhfsvgtkffisesptngtvclqtvklsgdckitksnfanpytvsitsp
ekimgylikkpgenvehkvisfsgsasitfteemldgehnllcgdksakipkt